Variant report

Variant	rs9383030
Chromosome Location	chr6:15160963-15160964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12527322	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2008075	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28441171	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs66673460	0.81[AFR][1000 genomes]
rs67978363	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7763564	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9296970	0.95[ASN][1000 genomes]
rs9296971	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9358051	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9370800	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9370801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383029	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9383032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396561	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9396562	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396564	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9476764	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9476768	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15160400-15162200	Enhancers	K562	blood
2	chr6:15160600-15161800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:15160600-15161800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:15160600-15162200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:15160800-15161600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:15160800-15161800	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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