Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:15143787..15146280-chr6:15158034..15160190,2	K562	blood:
2	chr6:15144340..15146667-chr6:15148737..15150328,2	K562	blood:
3	chr6:15096022..15098594-chr6:15145992..15148961,2	K562	blood:
4	chr6:15143619..15146318-chr6:15151883..15153386,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264687	Chromatin interaction

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs6900532	0.86[ASN][1000 genomes]
rs6905502	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6921572	0.94[ASN][1000 genomes]
rs6935115	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72832902	0.95[ASN][1000 genomes]
rs72834506	0.95[ASN][1000 genomes]
rs72834509	0.95[ASN][1000 genomes]
rs7747637	0.85[ASN][1000 genomes]
rs9349966	0.95[ASN][1000 genomes]
rs9349967	0.94[ASN][1000 genomes]
rs9358052	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9358054	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9358055	0.94[ASN][1000 genomes]
rs9358056	0.95[ASN][1000 genomes]
rs9367864	0.98[ASN][1000 genomes]
rs9367865	0.97[ASN][1000 genomes]
rs9367866	0.95[ASN][1000 genomes]
rs9367867	0.95[ASN][1000 genomes]
rs9370795	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9370796	0.98[ASN][1000 genomes]
rs9370797	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9370798	0.97[ASN][1000 genomes]
rs9370801	0.81[AFR][1000 genomes]
rs9370802	0.95[ASN][1000 genomes]
rs9383026	0.94[ASN][1000 genomes]
rs9383027	0.95[ASN][1000 genomes]
rs9383030	0.81[AFR][1000 genomes]
rs9383031	0.95[ASN][1000 genomes]
rs9383032	0.81[AFR][1000 genomes]
rs9396560	0.97[ASN][1000 genomes]
rs9396561	0.81[AFR][1000 genomes]
rs9396562	0.90[AFR][1000 genomes]
rs9396564	0.80[AFR][1000 genomes]
rs9396565	0.95[ASN][1000 genomes]
rs9396567	0.95[ASN][1000 genomes]
rs9396568	0.95[ASN][1000 genomes]
rs9396569	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15144800-15146400	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr6:15145400-15148400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:15145600-15146600	Enhancers	Primary monocytes fromperipheralblood	blood

Quick Search: