Variant report

Variant	rs9370795
Chromosome Location	chr6:15143556-15143557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12175318	0.88[CHB][hapmap]
rs16876112	0.84[YRI][hapmap]
rs3748063	0.88[CHB][hapmap]
rs66673460	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6900532	0.84[ASN][1000 genomes]
rs6905502	0.88[EUR][1000 genomes]
rs6921572	0.92[ASN][1000 genomes]
rs6935115	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72832902	0.93[ASN][1000 genomes]
rs72834506	0.93[ASN][1000 genomes]
rs72834509	0.93[ASN][1000 genomes]
rs7747637	0.84[ASN][1000 genomes]
rs9349966	0.93[ASN][1000 genomes]
rs9349967	0.92[ASN][1000 genomes]
rs9358052	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9358054	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9358055	0.92[ASN][1000 genomes]
rs9358056	0.94[ASN][1000 genomes]
rs9367864	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9367865	0.95[ASN][1000 genomes]
rs9367866	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9367867	0.93[ASN][1000 genomes]
rs9370796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9370797	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370798	0.95[ASN][1000 genomes]
rs9370801	0.89[YRI][hapmap]
rs9370802	0.93[ASN][1000 genomes]
rs9383026	0.92[ASN][1000 genomes]
rs9383027	0.93[ASN][1000 genomes]
rs9383029	0.89[YRI][hapmap]
rs9383031	0.93[ASN][1000 genomes]
rs9396560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9396561	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs9396562	0.94[AFR][1000 genomes]
rs9396565	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9396567	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9396568	0.93[ASN][1000 genomes]
rs9396569	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15143000-15144000	Enhancers	Fetal Lung	lung
2	chr6:15143200-15143800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:15143400-15143800	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links