Variant report

Variant	rs12175318
Chromosome Location	chr6:15276772-15276773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15275776..15277697-chr6:15279697..15282861,3	K562	blood:
2	chr6:15273950..15277864-chr6:15279657..15281867,3	MCF-7	breast:
3	chr6:15272773..15275476-chr6:15276745..15279472,5	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12174461	0.92[AMR][1000 genomes]
rs3748063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6901438	0.99[ASN][1000 genomes]
rs6938807	1.00[YRI][hapmap]
rs7754848	1.00[YRI][hapmap]
rs7771939	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9349974	0.92[AMR][1000 genomes]
rs9367864	0.88[CHB][hapmap]
rs9367871	0.85[AMR][1000 genomes]
rs9367872	0.92[AMR][1000 genomes]
rs9370796	0.88[CHB][hapmap]
rs9370807	0.92[AMR][1000 genomes]
rs9370808	0.85[AMR][1000 genomes]
rs9383045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396560	1.00[CHB][hapmap]
rs9396565	0.88[CHB][hapmap]
rs9396567	0.88[CHB][hapmap]
rs9396573	0.84[AMR][1000 genomes]
rs9396578	1.00[GIH][hapmap]
rs9637976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv601006	chr6:15275305-15300590	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15251200-15279400	Weak transcription	A549	lung
2	chr6:15261000-15283800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:15265400-15279000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:15266200-15279200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:15267200-15279600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:15268000-15279800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:15269200-15290000	Weak transcription	NHLF	lung
8	chr6:15269400-15276800	Weak transcription	NH-A	brain
9	chr6:15269600-15276800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:15269600-15276800	Weak transcription	Pancreas	Pancrea
11	chr6:15269800-15280000	Weak transcription	NHDF-Ad	bronchial
12	chr6:15270000-15280800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:15270000-15281000	Weak transcription	Spleen	Spleen
14	chr6:15270000-15285400	Weak transcription	Thymus	Thymus
15	chr6:15270200-15277600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:15270200-15279600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:15270200-15279800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:15270200-15281600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:15270200-15288800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:15270400-15277000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:15271000-15278800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:15271000-15278800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:15271000-15279000	Weak transcription	Fetal Intestine Large	intestine
24	chr6:15271000-15279200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:15273000-15276800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr6:15274000-15277400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr6:15274400-15277800	Enhancers	H1 Cell Line	embryonic stem cell
28	chr6:15274400-15278200	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:15274600-15276800	Enhancers	Fetal Lung	lung
30	chr6:15274600-15277200	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr6:15274600-15277200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr6:15274600-15278400	Enhancers	Brain Anterior Caudate	brain
33	chr6:15274800-15276800	Enhancers	K562	blood
34	chr6:15274800-15277000	Genic enhancers	GM12878-XiMat	blood
35	chr6:15274800-15277200	Enhancers	H9 Cell Line	embryonic stem cell
36	chr6:15274800-15277200	Enhancers	Brain Cingulate Gyrus	brain
37	chr6:15274800-15277200	Enhancers	Brain Hippocampus Middle	brain
38	chr6:15274800-15277600	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr6:15274800-15278400	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr6:15274800-15278400	Enhancers	Brain Substantia Nigra	brain
41	chr6:15274800-15278800	Enhancers	Adipose Nuclei	Adipose
42	chr6:15274800-15279800	Enhancers	Psoas Muscle	Psoas
43	chr6:15274800-15280000	Enhancers	Liver	Liver
44	chr6:15275000-15277000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:15275000-15277200	Enhancers	Right Ventricle	heart
46	chr6:15275000-15277400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:15275000-15278200	Enhancers	Colon Smooth Muscle	Colon
48	chr6:15275000-15279400	Enhancers	HepG2	liver
49	chr6:15275000-15280200	Weak transcription	Fetal Stomach	stomach
50	chr6:15275000-15282600	Enhancers	Primary B cells from peripheral blood	blood

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