Variant report

Variant	rs9396560
Chromosome Location	chr6:15136789-15136790
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15134521..15137153-chr6:15210415..15211932,2	K562	blood:
2	chr6:15130172..15131963-chr6:15134360..15137201,2	K562	blood:
3	chr6:15103877..15106260-chr6:15135421..15138243,2	K562	blood:
4	chr6:15132794..15134906-chr6:15135026..15137692,3	K562	blood:
5	chr6:15136761..15139272-chr6:15149097..15150701,2	MCF-7	breast:
6	chr6:15136573..15138156-chr6:15245614..15247177,2	K562	blood:

Variant related genes	Relation type
ENSG00000216754	Chromatin interaction
ENSG00000264687	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11961625	0.88[EUR][1000 genomes]
rs11968363	0.95[EUR][1000 genomes]
rs12175318	1.00[CHB][hapmap]
rs34724062	0.95[EUR][1000 genomes]
rs3748063	1.00[CHB][hapmap]
rs66673460	0.97[ASN][1000 genomes]
rs6900532	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6921572	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6935115	0.92[ASN][1000 genomes]
rs72832902	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72834506	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72834509	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7747637	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9349966	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9349967	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9358052	0.92[ASN][1000 genomes]
rs9358054	0.92[ASN][1000 genomes]
rs9358055	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9358056	0.95[ASN][1000 genomes]
rs9367864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9367865	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9367866	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9367867	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9370795	0.95[ASN][1000 genomes]
rs9370796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9370797	0.95[ASN][1000 genomes]
rs9370798	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370802	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9383026	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383027	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9383031	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9383033	0.90[EUR][1000 genomes]
rs9396565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396568	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396569	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15133600-15137400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:15135200-15137400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:15135400-15137400	Weak transcription	HMEC	breast
4	chr6:15135600-15137200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:15135600-15137200	Weak transcription	NHEK	skin
6	chr6:15135800-15137600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:15136200-15136800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:15136200-15137600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:15136400-15136800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:15136400-15137000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:15136400-15137000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:15136600-15138400	Enhancers	GM12878-XiMat	blood

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