Variant report

Variant	rs9367866
Chromosome Location	chr6:15161580-15161581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15159244..15161840-chr6:15169740..15172475,3	K562	blood:
2	chr6:15159787..15162228-chr6:15245080..15247075,2	MCF-7	breast:
3	chr6:15158330..15160167-chr6:15160268..15162625,2	K562	blood:

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11961625	0.93[EUR][1000 genomes]
rs11968363	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34724062	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66673460	0.95[ASN][1000 genomes]
rs6900532	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6921572	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6935115	0.94[ASN][1000 genomes]
rs72832902	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834506	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834509	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747637	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9349966	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349967	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358052	0.97[ASN][1000 genomes]
rs9358054	0.97[ASN][1000 genomes]
rs9358055	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9358056	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9367864	0.88[CEU][hapmap];0.88[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9367865	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9367867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370795	0.93[ASN][1000 genomes]
rs9370796	0.88[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370797	0.97[ASN][1000 genomes]
rs9370798	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9370802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383026	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9383027	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383033	0.95[EUR][1000 genomes]
rs9396560	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396565	0.88[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396567	0.88[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396569	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15160400-15162200	Enhancers	K562	blood
2	chr6:15160600-15161800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:15160600-15161800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:15160600-15162200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:15160800-15161600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:15160800-15161800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:15161000-15162200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:15161400-15161800	Enhancers	Osteobl	bone

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