Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15175874..15178007-chr6:15178293..15181255,2	K562	blood:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11961625	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11968363	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34724062	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6900532	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6905502	0.99[ASN][1000 genomes]
rs6921572	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6928847	0.99[ASN][1000 genomes]
rs72832902	0.86[EUR][1000 genomes]
rs72834506	0.95[EUR][1000 genomes]
rs72834509	0.95[EUR][1000 genomes]
rs7747637	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9349966	0.95[EUR][1000 genomes]
rs9349967	0.95[EUR][1000 genomes]
rs9358055	0.95[EUR][1000 genomes]
rs9358057	0.86[ASN][1000 genomes]
rs9367864	0.88[EUR][1000 genomes]
rs9367865	0.86[EUR][1000 genomes]
rs9367866	0.95[EUR][1000 genomes]
rs9367867	0.95[EUR][1000 genomes]
rs9367869	0.86[ASN][1000 genomes]
rs9370796	0.88[EUR][1000 genomes]
rs9370798	0.86[EUR][1000 genomes]
rs9370802	0.95[EUR][1000 genomes]
rs9370805	0.86[ASN][1000 genomes]
rs9370806	0.86[ASN][1000 genomes]
rs9383026	0.93[EUR][1000 genomes]
rs9383027	0.95[EUR][1000 genomes]
rs9383031	0.91[EUR][1000 genomes]
rs9383040	0.86[ASN][1000 genomes]
rs9396560	0.90[EUR][1000 genomes]
rs9396565	0.90[EUR][1000 genomes]
rs9396567	0.95[EUR][1000 genomes]
rs9396568	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv819441	chr6:15173846-15179631	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15171400-15177200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:15175800-15177000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search: