Variant report

Variant	rs9383031
Chromosome Location	chr6:15162928-15162929
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11961625	0.88[EUR][1000 genomes]
rs11968363	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34724062	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66673460	0.95[ASN][1000 genomes]
rs6900532	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6921572	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6923973	0.83[EUR][1000 genomes]
rs6935115	0.94[ASN][1000 genomes]
rs72832895	0.83[EUR][1000 genomes]
rs72832897	0.83[EUR][1000 genomes]
rs72832902	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834506	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834509	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747637	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9349966	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349967	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358052	0.97[ASN][1000 genomes]
rs9358054	0.97[ASN][1000 genomes]
rs9358055	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9358056	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9367864	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9367865	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9367866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367867	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370795	0.93[ASN][1000 genomes]
rs9370796	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370797	0.97[ASN][1000 genomes]
rs9370798	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9370802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383026	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9383027	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383033	0.91[EUR][1000 genomes]
rs9396560	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396565	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396567	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396569	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15161800-15166200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:15162200-15166400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links