Variant report

Variant	rs6935115
Chromosome Location	chr6:15170802-15170803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15169846..15172434-chr6:15181628..15183305,2	K562	blood:
2	chr6:15170363..15172939-chr6:15173815..15175611,2	K562	blood:
3	chr6:15159244..15161840-chr6:15169740..15172475,3	K562	blood:
4	chr6:15168254..15169960-chr6:15170062..15172300,2	K562	blood:
5	chr6:15169846..15172117-chr6:15181369..15183305,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11968363	0.83[ASN][1000 genomes]
rs12175318	0.88[CHB][hapmap]
rs34724062	0.83[ASN][1000 genomes]
rs3748063	0.88[CHB][hapmap]
rs66673460	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6900532	0.87[ASN][1000 genomes]
rs6921572	0.95[ASN][1000 genomes]
rs6928847	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72832902	0.94[ASN][1000 genomes]
rs72834506	0.94[ASN][1000 genomes]
rs72834509	0.94[ASN][1000 genomes]
rs7747637	0.90[ASN][1000 genomes]
rs9349966	0.94[ASN][1000 genomes]
rs9349967	0.98[ASN][1000 genomes]
rs9358052	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9358054	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9358055	0.95[ASN][1000 genomes]
rs9358056	0.97[ASN][1000 genomes]
rs9367864	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9367865	0.95[ASN][1000 genomes]
rs9367866	0.88[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9367867	0.94[ASN][1000 genomes]
rs9370795	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9370796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9370797	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9370798	0.95[ASN][1000 genomes]
rs9370802	0.94[ASN][1000 genomes]
rs9383026	0.89[ASN][1000 genomes]
rs9383027	0.94[ASN][1000 genomes]
rs9383031	0.94[ASN][1000 genomes]
rs9396560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9396565	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9396567	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9396568	0.94[ASN][1000 genomes]
rs9396569	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15170000-15172200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:15170000-15172200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:15170000-15172200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:15170000-15172200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:15170000-15172400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:15170200-15171600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:15170200-15171600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:15170200-15172200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:15170200-15172200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:15170200-15172200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:15170200-15172200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:15170200-15172200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:15170400-15171800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:15170400-15172200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:15170400-15172200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:15170600-15171000	Enhancers	Brain Germinal Matrix	brain
17	chr6:15170600-15172000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:15170800-15171200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:15170800-15171600	Enhancers	GM12878-XiMat	blood
20	chr6:15170800-15171800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:15170800-15171800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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