Variant report

Variant	rs9367865
Chromosome Location	chr6:15148802-15148803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15133229..15135738-chr6:15147564..15149146,2	K562	blood:
2	chr6:15147856..15151805-chr6:15244004..15248641,4	MCF-7	breast:
3	chr6:15096022..15098594-chr6:15145992..15148961,2	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11961625	0.83[EUR][1000 genomes]
rs11968363	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34724062	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66673460	0.97[ASN][1000 genomes]
rs6900532	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6921572	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6935115	0.95[ASN][1000 genomes]
rs72832902	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72834506	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72834509	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7747637	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9349966	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9349967	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9358052	0.95[ASN][1000 genomes]
rs9358054	0.95[ASN][1000 genomes]
rs9358055	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9358056	0.98[ASN][1000 genomes]
rs9367864	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9367866	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9367867	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9370795	0.95[ASN][1000 genomes]
rs9370796	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9370797	0.98[ASN][1000 genomes]
rs9370798	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370802	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9370805	0.81[AMR][1000 genomes]
rs9383026	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383027	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383031	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383033	0.86[EUR][1000 genomes]
rs9383040	0.81[AMR][1000 genomes]
rs9396560	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9396565	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396567	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396568	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396569	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15146400-15151000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:15146600-15150600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:15148000-15149600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:15148200-15149200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:15148200-15149200	Enhancers	HSMM	muscle
6	chr6:15148200-15149400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:15148200-15149400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:15148200-15149400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:15148200-15149400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:15148200-15149400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:15148200-15149400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:15148200-15149400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:15148200-15149400	Enhancers	Esophagus	oesophagus
14	chr6:15148200-15149400	Enhancers	Fetal Brain Male	brain
15	chr6:15148200-15149400	Enhancers	Psoas Muscle	Psoas
16	chr6:15148200-15149400	Enhancers	NHEK	skin
17	chr6:15148200-15149400	Enhancers	Osteobl	bone
18	chr6:15148200-15149600	Enhancers	HMEC	breast
19	chr6:15148400-15149200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:15148400-15149200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr6:15148400-15149400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:15148400-15149400	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr6:15148400-15150600	Weak transcription	Right Atrium	heart
24	chr6:15148600-15149000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:15148600-15149200	Enhancers	Primary B cells from peripheral blood	blood
26	chr6:15148600-15149200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:15148600-15149200	Enhancers	Stomach Smooth Muscle	stomach
28	chr6:15148600-15149400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:15148600-15149400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:15148600-15149400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr6:15148600-15149400	Enhancers	Fetal Muscle Leg	muscle
32	chr6:15148600-15149400	Enhancers	Fetal Stomach	stomach
33	chr6:15148600-15149400	Bivalent Enhancer	HepG2	liver
34	chr6:15148600-15149400	Enhancers	NH-A	brain
35	chr6:15148600-15153000	Weak transcription	K562	blood
36	chr6:15148800-15149200	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr6:15148800-15149200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr6:15148800-15149200	Enhancers	GM12878-XiMat	blood
39	chr6:15148800-15149200	Enhancers	HSMMtube	muscle
40	chr6:15148800-15149400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:15148800-15149400	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr6:15148800-15149400	Enhancers	Fetal Brain Female	brain

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