Variant report

Variant	rs11968363
Chromosome Location	chr6:15173885-15173886
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15170363..15172939-chr6:15173815..15175611,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11961625	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34724062	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900532	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6905502	0.93[ASN][1000 genomes]
rs6921572	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6928847	0.93[ASN][1000 genomes]
rs6935115	0.83[ASN][1000 genomes]
rs72832902	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72834506	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72834509	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7747637	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9349966	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9349967	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9358052	0.80[ASN][1000 genomes]
rs9358054	0.80[ASN][1000 genomes]
rs9358055	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9358056	0.83[ASN][1000 genomes]
rs9358057	0.81[ASN][1000 genomes]
rs9367864	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9367865	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9367866	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9367867	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9367869	0.81[ASN][1000 genomes]
rs9370796	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9370797	0.80[ASN][1000 genomes]
rs9370798	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9370802	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9370805	0.81[ASN][1000 genomes]
rs9370806	0.81[ASN][1000 genomes]
rs9383026	0.98[EUR][1000 genomes]
rs9383027	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9383031	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9383033	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383040	0.81[ASN][1000 genomes]
rs9396560	0.95[EUR][1000 genomes]
rs9396565	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9396567	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9396568	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9396569	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv819441	chr6:15173846-15179631	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15171400-15177200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:15172200-15175400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:15173600-15174000	Enhancers	Fetal Heart	heart

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