Variant report

Variant	rs72832902
Chromosome Location	chr6:15150687-15150688
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr6:15150412-15150806	GM12878	blood:	n/a	n/a
2	CEBPB	chr6:15150511-15150824	K562	blood:	n/a	chr6:15150672-15150683 chr6:15150673-15150684 chr6:15150631-15150639 chr6:15150672-15150683 chr6:15150672-15150685 chr6:15150672-15150685
3	CTCF	chr6:15150540-15150690	NHLF	lung:	n/a	n/a
4	EBF1	chr6:15150556-15150748	GM12878	blood:	n/a	n/a
5	BATF	chr6:15150444-15150764	GM12878	blood:	n/a	chr6:15150606-15150617
6	NFYB	chr6:15150442-15150838	GM12878	blood:	n/a	chr6:15150627-15150639 chr6:15150628-15150641 chr6:15150565-15150577
7	EP300	chr6:15150597-15150724	GM12878	blood:	n/a	n/a
8	CEBPB	chr6:15150602-15150767	HepG2	liver:	n/a	chr6:15150672-15150683 chr6:15150673-15150684 chr6:15150631-15150639 chr6:15150672-15150683 chr6:15150672-15150685 chr6:15150672-15150685

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15147856..15151805-chr6:15244004..15248641,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264687	TF binding region
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11961625	0.83[EUR][1000 genomes]
rs11968363	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34724062	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66673460	0.95[ASN][1000 genomes]
rs6900532	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6921572	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6935115	0.94[ASN][1000 genomes]
rs72834506	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834509	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747637	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9349966	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349967	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358052	0.97[ASN][1000 genomes]
rs9358054	0.97[ASN][1000 genomes]
rs9358055	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9358056	0.97[ASN][1000 genomes]
rs9367864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9367865	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9367866	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367867	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370795	0.93[ASN][1000 genomes]
rs9370796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370797	0.97[ASN][1000 genomes]
rs9370798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9370802	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370805	0.81[AMR][1000 genomes]
rs9383026	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9383027	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383031	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383033	0.86[EUR][1000 genomes]
rs9383040	0.81[AMR][1000 genomes]
rs9396560	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396565	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396567	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396568	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396569	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15146400-15151000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:15148600-15153000	Weak transcription	K562	blood
3	chr6:15149200-15153000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:15149400-15151400	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:15150400-15152000	Enhancers	GM12878-XiMat	blood
6	chr6:15150400-15152600	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:15150600-15152600	Enhancers	Primary monocytes fromperipheralblood	blood

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