Variant report

Variant	rs6900532
Chromosome Location	chr6:15166041-15166042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15163487..15166298-chr6:15243296..15245626,2	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11961625	0.88[EUR][1000 genomes]
rs11968363	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34724062	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66673460	0.86[ASN][1000 genomes]
rs6921572	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6935115	0.87[ASN][1000 genomes]
rs72832902	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72834506	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72834509	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7747637	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9349966	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9349967	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9358052	0.90[ASN][1000 genomes]
rs9358054	0.90[ASN][1000 genomes]
rs9358055	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9358056	0.90[ASN][1000 genomes]
rs9367864	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9367865	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9367866	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9367867	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9370795	0.84[ASN][1000 genomes]
rs9370796	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9370797	0.87[ASN][1000 genomes]
rs9370798	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9370802	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9383026	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9383027	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9383031	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9383033	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9396560	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9396565	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9396567	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9396568	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9396569	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15161800-15166200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:15162200-15166400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:15166000-15166400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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