Variant report

Variant	rs7747637
Chromosome Location	chr6:15172268-15172269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15169846..15172434-chr6:15181628..15183305,2	K562	blood:
2	chr6:15170363..15172939-chr6:15173815..15175611,2	K562	blood:
3	chr6:15159244..15161840-chr6:15169740..15172475,3	K562	blood:
4	chr6:15168254..15169960-chr6:15170062..15172300,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11961625	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11968363	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12175318	1.00[CHB][hapmap]
rs34724062	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3748063	1.00[CHB][hapmap]
rs66673460	0.85[ASN][1000 genomes]
rs6900532	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6905502	0.86[ASN][1000 genomes]
rs6921572	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6928847	0.86[ASN][1000 genomes]
rs6935115	0.90[ASN][1000 genomes]
rs72832902	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72834506	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72834509	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9349966	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9349967	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9358052	0.87[ASN][1000 genomes]
rs9358054	0.87[ASN][1000 genomes]
rs9358055	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9358056	0.90[ASN][1000 genomes]
rs9367864	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[CHD][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9367865	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9367866	0.88[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9367867	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9370795	0.84[ASN][1000 genomes]
rs9370796	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9370797	0.87[ASN][1000 genomes]
rs9370798	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9370802	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9383026	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383027	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9383031	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9383033	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9396560	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9396565	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9396567	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9396568	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9396569	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15170000-15172400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:15171400-15177200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:15172000-15172400	Enhancers	GM12878-XiMat	blood
4	chr6:15172200-15175400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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