Variant report

Variant	rs11961625
Chromosome Location	chr6:15179609-15179610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15175874..15178007-chr6:15178293..15181255,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11968363	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12175318	1.00[CHB][hapmap]
rs34724062	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3748063	1.00[CHB][hapmap]
rs6900532	0.88[EUR][1000 genomes]
rs6905502	0.97[ASN][1000 genomes]
rs6921572	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6928847	0.97[ASN][1000 genomes]
rs72832902	0.83[EUR][1000 genomes]
rs72834506	0.93[EUR][1000 genomes]
rs72834509	0.93[EUR][1000 genomes]
rs7747637	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9349966	0.93[EUR][1000 genomes]
rs9349967	0.93[EUR][1000 genomes]
rs9358055	0.93[EUR][1000 genomes]
rs9358057	0.88[ASN][1000 genomes]
rs9367864	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[CHD][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs9367865	0.83[EUR][1000 genomes]
rs9367866	0.88[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs9367867	0.93[EUR][1000 genomes]
rs9367869	0.88[ASN][1000 genomes]
rs9370796	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes]
rs9370798	0.83[EUR][1000 genomes]
rs9370802	0.93[EUR][1000 genomes]
rs9370805	0.88[ASN][1000 genomes]
rs9370806	0.88[ASN][1000 genomes]
rs9383026	0.90[EUR][1000 genomes]
rs9383027	0.93[EUR][1000 genomes]
rs9383031	0.88[EUR][1000 genomes]
rs9383033	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383040	0.88[ASN][1000 genomes]
rs9396560	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs9396565	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[EUR][1000 genomes]
rs9396567	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[EUR][1000 genomes]
rs9396568	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv819441	chr6:15173846-15179631	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15177600-15181600	Weak transcription	K562	blood

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