Variant report

Variant	rs9370806
Chromosome Location	chr6:15205505-15205506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11961625	0.88[ASN][1000 genomes]
rs11968363	0.81[ASN][1000 genomes]
rs12174461	0.90[ASN][1000 genomes]
rs34724062	0.81[ASN][1000 genomes]
rs6905502	0.85[ASN][1000 genomes]
rs6928847	0.85[ASN][1000 genomes]
rs72832901	0.88[EUR][1000 genomes]
rs72834518	0.88[EUR][1000 genomes]
rs9349974	0.90[ASN][1000 genomes]
rs9358057	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367869	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367871	0.88[ASN][1000 genomes]
rs9367872	0.90[ASN][1000 genomes]
rs9370805	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370807	0.90[ASN][1000 genomes]
rs9370808	0.90[ASN][1000 genomes]
rs9383033	0.86[ASN][1000 genomes]
rs9383040	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396573	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15200600-15206600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:15202400-15207400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:15205200-15205800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:15205200-15206600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:15205200-15206800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:15205200-15207600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:15205400-15206200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:15205400-15207200	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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