Variant report

Variant	rs9367869
Chromosome Location	chr6:15209475-15209476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000234261	Chromatin interaction
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11961625	0.88[ASN][1000 genomes]
rs11968363	0.81[ASN][1000 genomes]
rs12174461	0.90[ASN][1000 genomes]
rs34724062	0.81[ASN][1000 genomes]
rs6905502	0.85[ASN][1000 genomes]
rs6928847	0.85[ASN][1000 genomes]
rs9349974	0.90[ASN][1000 genomes]
rs9358057	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9367871	0.88[ASN][1000 genomes]
rs9367872	0.90[ASN][1000 genomes]
rs9370805	1.00[ASN][1000 genomes]
rs9370806	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370807	0.90[ASN][1000 genomes]
rs9370808	0.90[ASN][1000 genomes]
rs9383033	0.86[ASN][1000 genomes]
rs9383040	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396573	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15206800-15210400	Weak transcription	K562	blood
2	chr6:15207400-15210400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:15207600-15210200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:15208200-15209600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:15208200-15209600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:15208200-15210600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:15208400-15210600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:15208400-15210600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:15208400-15210800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:15208400-15222000	Weak transcription	Right Atrium	heart
11	chr6:15208600-15210400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:15208600-15210600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:15209000-15210400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:15209000-15211000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:15209200-15210200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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