Variant report

Variant	rs9358057
Chromosome Location	chr6:15207875-15207876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14772273..14773924-chr6:15207044..15208560,2	K562	blood:
2	chr6:15207140..15215305-chr6:15243300..15250227,33	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000235488	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11961625	0.88[ASN][1000 genomes]
rs11968363	0.81[ASN][1000 genomes]
rs12174461	0.90[ASN][1000 genomes]
rs34724062	0.81[ASN][1000 genomes]
rs6905502	0.85[ASN][1000 genomes]
rs6928847	0.85[ASN][1000 genomes]
rs9349974	0.90[ASN][1000 genomes]
rs9367869	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9367871	0.88[ASN][1000 genomes]
rs9367872	0.90[ASN][1000 genomes]
rs9370805	1.00[ASN][1000 genomes]
rs9370806	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370807	0.90[ASN][1000 genomes]
rs9370808	0.90[ASN][1000 genomes]
rs9383033	0.86[ASN][1000 genomes]
rs9383040	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396573	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15205800-15208400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:15206400-15209000	Enhancers	Osteobl	bone
3	chr6:15206600-15208200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:15206600-15208400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:15206800-15208200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:15206800-15208600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:15206800-15210400	Weak transcription	K562	blood
8	chr6:15207000-15208200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:15207000-15208200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:15207000-15208200	Weak transcription	HSMM	muscle
11	chr6:15207000-15208400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:15207000-15208400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:15207000-15208600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:15207200-15208200	Weak transcription	NHEK	skin
15	chr6:15207200-15208400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:15207400-15208400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:15207400-15208800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:15207400-15210400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:15207600-15208000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:15207600-15208000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:15207600-15208400	Weak transcription	NHDF-Ad	bronchial
22	chr6:15207600-15210200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:15207800-15208200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr6:15207800-15208200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:15207800-15208600	Weak transcription	H1 Cell Line	embryonic stem cell

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