Variant report

Variant	nsv819441
Chromosome Location	chr6:15173846-15179631
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15170363..15172939-chr6:15173815..15175611,2	K562	blood:
2	chr6:15175874..15178007-chr6:15178293..15181255,2	K562	blood:
3	chr6:15175874..15178007-chr6:15178293..15181255,2	K562	blood:
4	chr6:15177562..15179581-chr6:15194132..15195996,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTNBP1-4	chr6:15177072-15177163	XLOC_005619

Extended variants
information (count: 215 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:215 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191135798	chr6:15173851-15173852	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs569363564	chr6:15173863-15173864	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs142038129	chr6:15173864-15173865	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs11968363	chr6:15173885-15173886	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs79548145	chr6:15173907-15173908	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs184947890	chr6:15173913-15173914	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs188167693	chr6:15173950-15173951	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs9476768	chr6:15173956-15173957	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs550243790	chr6:15173970-15173971	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs569027419	chr6:15173975-15173976	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs538000291	chr6:15173978-15173979	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs573788313	chr6:15173979-15173980	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs560613763	chr6:15173980-15173981	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs34724062	chr6:15174028-15174029	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs192965679	chr6:15174081-15174082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs576985726	chr6:15174120-15174121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs529660926	chr6:15174158-15174159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs542306263	chr6:15174194-15174195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs559419662	chr6:15174201-15174202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs35020077	chr6:15174220-15174221	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs79674696	chr6:15174246-15174247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs35158441	chr6:15174247-15174248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs397886395	chr6:15174248-15174249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs397887284	chr6:15174249-15174250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs398000582	chr6:15174267-15174268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs575437070	chr6:15174337-15174338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs377255112	chr6:15174359-15174360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs541403186	chr6:15174391-15174392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs111290210	chr6:15174423-15174424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs544372636	chr6:15174426-15174427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs564456410	chr6:15174436-15174437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs577902178	chr6:15174487-15174488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs34998814	chr6:15174563-15174564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs398049047	chr6:15174575-15174576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs7754820	chr6:15174576-15174577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs201193619	chr6:15174578-15174579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs201859140	chr6:15174582-15174583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs370428951	chr6:15174594-15174595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs560091955	chr6:15174672-15174673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs188952690	chr6:15174693-15174694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs533740858	chr6:15174749-15174750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs549074071	chr6:15174828-15174829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs562519472	chr6:15174833-15174834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs111544986	chr6:15174892-15174893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs141092397	chr6:15174935-15174936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs375602280	chr6:15174961-15174962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs374307713	chr6:15175013-15175014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs111803347	chr6:15175045-15175046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs138084017	chr6:15175046-15175047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs114909512	chr6:15175082-15175083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
small cell lung cancer	20016488	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Osteosarcoma	16790693	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Ovarian cancer	21720365	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Bladder cancer	21909424	CNVD
Burkitt''s lymphoma	19759907	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
abnormal development	18461090	CNVD
Cancer	16790693	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21785460	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15171400-15177200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:15172200-15175400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:15173600-15174000	Enhancers	Fetal Heart	heart
4	chr6:15175400-15175800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:15175800-15177000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:15177000-15177600	Enhancers	K562	blood
7	chr6:15177200-15177400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:15177200-15177600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:15177600-15181600	Weak transcription	K562	blood

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