Variant report

Variant	rs7771939
Chromosome Location	chr6:15269455-15269456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15267883..15270425-chr6:15297715..15299571,2	K562	blood:
2	chr6:15265107..15267530-chr6:15269277..15271589,2	MCF-7	breast:
3	chr6:15268694..15271371-chr6:15290123..15292738,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12174461	0.92[AMR][1000 genomes]
rs12175318	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3748063	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901438	1.00[ASN][1000 genomes]
rs9349974	0.92[AMR][1000 genomes]
rs9367871	0.85[AMR][1000 genomes]
rs9367872	0.92[AMR][1000 genomes]
rs9370807	0.92[AMR][1000 genomes]
rs9370808	0.85[AMR][1000 genomes]
rs9383045	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396573	0.84[AMR][1000 genomes]
rs9396577	0.81[ASN][1000 genomes]
rs9637976	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15251200-15279400	Weak transcription	A549	lung
2	chr6:15253200-15269600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr6:15254200-15269600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:15254800-15269800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:15257800-15270000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:15258800-15270400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:15261000-15283800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:15261200-15275000	Weak transcription	HMEC	breast
9	chr6:15261600-15270000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr6:15261600-15270600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:15262400-15270200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:15262600-15269600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:15262800-15270000	Enhancers	Fetal Thymus	thymus
14	chr6:15262800-15270000	Enhancers	Spleen	Spleen
15	chr6:15262800-15270200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:15262800-15271200	Enhancers	Primary B cells from peripheral blood	blood
17	chr6:15263000-15269600	Enhancers	Right Ventricle	heart
18	chr6:15263000-15270200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr6:15263000-15271400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr6:15263200-15269800	Enhancers	Left Ventricle	heart
21	chr6:15263200-15270000	Enhancers	Fetal Muscle Leg	muscle
22	chr6:15263200-15270200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:15264000-15269800	Enhancers	Gastric	stomach
24	chr6:15264200-15269800	Enhancers	Fetal Lung	lung
25	chr6:15264200-15270000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr6:15264200-15270000	Enhancers	Fetal Stomach	stomach
27	chr6:15264200-15270200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr6:15264200-15270200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr6:15264200-15270200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr6:15264200-15270200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:15264200-15270200	Enhancers	Fetal Heart	heart
32	chr6:15264200-15270600	Enhancers	Ovary	ovary
33	chr6:15264200-15272800	Enhancers	Brain Angular Gyrus	brain
34	chr6:15264400-15269800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:15264400-15269800	Enhancers	Fetal Brain Male	brain
36	chr6:15264400-15271000	Enhancers	Stomach Mucosa	stomach
37	chr6:15264800-15271000	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr6:15265000-15269600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr6:15265200-15269800	Enhancers	Fetal Intestine Small	intestine
40	chr6:15265400-15269600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr6:15265400-15269800	Enhancers	Fetal Muscle Trunk	muscle
42	chr6:15265400-15279000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:15265800-15274800	Weak transcription	NHEK	skin
44	chr6:15266000-15269800	Enhancers	Colon Smooth Muscle	Colon
45	chr6:15266000-15270800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr6:15266000-15275000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:15266200-15269600	Enhancers	Primary T cells from cord blood	blood
48	chr6:15266200-15270400	Enhancers	Brain Germinal Matrix	brain
49	chr6:15266200-15270400	Weak transcription	Esophagus	oesophagus
50	chr6:15266200-15279200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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