Variant report

Variant	rs6901438
Chromosome Location	chr6:15270364-15270365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15267883..15270425-chr6:15297715..15299571,2	K562	blood:
2	chr6:15265107..15267530-chr6:15269277..15271589,2	MCF-7	breast:
3	chr6:15268694..15271371-chr6:15290123..15292738,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12175318	0.99[ASN][1000 genomes]
rs3748063	1.00[ASN][1000 genomes]
rs7771939	1.00[ASN][1000 genomes]
rs9383045	1.00[ASN][1000 genomes]
rs9396577	0.81[ASN][1000 genomes]
rs9637976	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15251200-15279400	Weak transcription	A549	lung
2	chr6:15258800-15270400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:15261000-15283800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:15261200-15275000	Weak transcription	HMEC	breast
5	chr6:15261600-15270600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:15262800-15271200	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:15263000-15271400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:15264200-15270600	Enhancers	Ovary	ovary
9	chr6:15264200-15272800	Enhancers	Brain Angular Gyrus	brain
10	chr6:15264400-15271000	Enhancers	Stomach Mucosa	stomach
11	chr6:15264800-15271000	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr6:15265400-15279000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:15265800-15274800	Weak transcription	NHEK	skin
14	chr6:15266000-15270800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:15266000-15275000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:15266200-15270400	Enhancers	Brain Germinal Matrix	brain
17	chr6:15266200-15270400	Weak transcription	Esophagus	oesophagus
18	chr6:15266200-15279200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:15266800-15270800	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr6:15267200-15270400	Enhancers	Primary hematopoietic stem cells	blood
21	chr6:15267200-15279600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:15267400-15270400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:15267400-15271000	Enhancers	Right Atrium	heart
24	chr6:15267400-15271400	Enhancers	HepG2	liver
25	chr6:15267400-15275000	Weak transcription	Osteobl	bone
26	chr6:15267800-15270800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr6:15268000-15272600	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr6:15268000-15279800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:15268200-15272000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:15268400-15274800	Weak transcription	Liver	Liver
31	chr6:15268600-15272600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:15268800-15270600	Weak transcription	Fetal Intestine Large	intestine
33	chr6:15268800-15271000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:15269200-15270400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:15269200-15271000	Enhancers	Duodenum Mucosa	Duodenum
36	chr6:15269200-15272400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:15269200-15272600	Enhancers	Brain Anterior Caudate	brain
38	chr6:15269200-15275200	Weak transcription	HSMM	muscle
39	chr6:15269200-15290000	Weak transcription	NHLF	lung
40	chr6:15269400-15270400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:15269400-15270400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:15269400-15270800	Enhancers	Brain Substantia Nigra	brain
43	chr6:15269400-15270800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr6:15269400-15270800	Enhancers	GM12878-XiMat	blood
45	chr6:15269400-15271800	Enhancers	H1 Cell Line	embryonic stem cell
46	chr6:15269400-15272600	Enhancers	Brain Hippocampus Middle	brain
47	chr6:15269400-15274200	Weak transcription	Psoas Muscle	Psoas
48	chr6:15269400-15274800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr6:15269400-15274800	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr6:15269400-15274800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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