Variant report

Variant	rs9396564
Chromosome Location	chr6:15147860-15147861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12527322	0.96[ASN][1000 genomes]
rs2008075	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28441171	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs66673460	0.80[AFR][1000 genomes]
rs67978363	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7763564	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9296970	0.96[ASN][1000 genomes]
rs9296971	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9358051	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9370797	0.81[AFR][1000 genomes]
rs9370800	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9370801	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9383029	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9383030	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9383032	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9396561	0.96[ASN][1000 genomes]
rs9396562	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9476764	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15145400-15148400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:15146400-15151000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:15146600-15150600	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links