Variant report
| Variant | rs67978363 |
|---|---|
| Chromosome Location | chr6:15154877-15154878 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr6:15154692-15154882 | HepG2 | liver: | n/a | chr6:15154738-15154752 chr6:15154739-15154754 chr6:15154740-15154751 chr6:15154739-15154755 chr6:15154739-15154750 chr6:15154739-15154750 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000264687 | TF binding region |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs12527322 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2008075 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs28441171 | 0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7763564 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9296970 | 0.95[ASN][1000 genomes] |
| rs9296971 | 0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9358051 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9370800 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9370801 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9383029 | 0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9383030 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9383032 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9383034 | 0.81[EUR][1000 genomes] |
| rs9396561 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9396562 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9396564 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9476764 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9476768 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830593 | chr6:15049636-15244190 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016007 | chr6:15099585-15159098 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv2762580 | chr6:15105917-15159110 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:15154000-15158600 | Weak transcription | K562 | blood |
