Variant report

Variant	rs7763564
Chromosome Location	chr6:15167340-15167341
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12527322	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13210761	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2008075	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28441171	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67978363	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7760174	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs9296970	0.86[ASN][1000 genomes]
rs9296971	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9358051	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370800	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9370801	0.87[CEU][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9383029	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9383030	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9383032	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9383034	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9396561	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9396562	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9396564	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9476759	0.84[YRI][hapmap]
rs9476764	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9476768	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15166200-15167400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:15166400-15170200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:15166600-15170000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:15166800-15170000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:15167200-15168000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr6:15167200-15168200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:15167200-15168200	Enhancers	Monocytes-CD14+_RO01746	blood

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