Variant report

Variant	rs9350014
Chromosome Location	chr6:16698028-16698029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16673497..16675626-chr6:16697435..16700638,3	K562	blood:
2	chr6:16690192..16694022-chr6:16694916..16700279,9	MCF-7	breast:
3	chr6:16695649..16698288-chr6:16760730..16763016,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124788	Chromatin interaction
ENSG00000229931	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59543599	1.00[AMR][1000 genomes]
rs9350013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9396703	1.00[AMR][1000 genomes]
rs9396704	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16662200-16699600	Weak transcription	Fetal Intestine Large	intestine
2	chr6:16662400-16699600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:16673200-16700400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:16678000-16700400	Weak transcription	Ovary	ovary
5	chr6:16685000-16700800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:16685600-16699800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:16690600-16699600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:16691000-16700400	Weak transcription	Fetal Brain Male	brain
9	chr6:16691200-16699800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:16691600-16699800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:16693200-16698200	Weak transcription	A549	lung
12	chr6:16693400-16700800	Weak transcription	Spleen	Spleen
13	chr6:16694400-16700800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:16694800-16698200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:16695400-16698200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:16695400-16698200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:16695800-16700400	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:16695800-16700400	Weak transcription	Right Ventricle	heart
19	chr6:16695800-16705000	Weak transcription	Pancreas	Pancrea
20	chr6:16696000-16699400	Weak transcription	GM12878-XiMat	blood
21	chr6:16696800-16700200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:16697000-16698200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr6:16697000-16698200	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr6:16697000-16698200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:16697200-16698200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr6:16697200-16698400	Enhancers	Aorta	Aorta
27	chr6:16697200-16699000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr6:16697200-16699200	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:16697200-16699400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:16697200-16699600	Enhancers	Colon Smooth Muscle	Colon
31	chr6:16697200-16699800	Enhancers	Brain Substantia Nigra	brain
32	chr6:16697200-16700400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:16697400-16698600	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr6:16697400-16698600	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr6:16697600-16698200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:16697600-16698200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:16697600-16698200	Enhancers	HSMM	muscle
38	chr6:16697600-16699200	Enhancers	HepG2	liver
39	chr6:16697600-16699600	Enhancers	Brain Hippocampus Middle	brain
40	chr6:16697600-16700600	Enhancers	Brain Cingulate Gyrus	brain
41	chr6:16697600-16700800	Enhancers	NHDF-Ad	bronchial
42	chr6:16697600-16700800	Enhancers	NHEK	skin
43	chr6:16697600-16701600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:16697800-16698200	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr6:16697800-16698200	Enhancers	Brain Anterior Caudate	brain
46	chr6:16697800-16698400	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr6:16697800-16698400	Enhancers	Esophagus	oesophagus
48	chr6:16697800-16698400	Enhancers	Left Ventricle	heart
49	chr6:16697800-16698600	Enhancers	Fetal Lung	lung
50	chr6:16697800-16698600	Enhancers	Psoas Muscle	Psoas

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