Variant report

Variant	rs9396703
Chromosome Location	chr6:16674673-16674674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:16673497..16675626-chr6:16697435..16700638,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59543599	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9350013	1.00[AMR][1000 genomes]
rs9350014	1.00[AMR][1000 genomes]
rs9367924	0.87[ASN][1000 genomes]
rs9370919	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9396704	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9396705	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16653800-16675000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:16662200-16684000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:16662200-16684000	Weak transcription	Placenta	Placenta
4	chr6:16662200-16685200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:16662200-16699600	Weak transcription	Fetal Intestine Large	intestine
6	chr6:16662400-16699600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:16669600-16685200	Weak transcription	Fetal Kidney	kidney
8	chr6:16669800-16674800	Weak transcription	HSMMtube	muscle
9	chr6:16669800-16677200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:16670200-16676000	Enhancers	Liver	Liver
11	chr6:16670400-16674800	Weak transcription	HSMM	muscle
12	chr6:16670400-16683600	Weak transcription	Small Intestine	intestine
13	chr6:16670600-16674800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:16670600-16674800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:16670600-16675000	Weak transcription	Aorta	Aorta
16	chr6:16670600-16675000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:16670600-16675200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:16670600-16675200	Weak transcription	Spleen	Spleen
19	chr6:16670600-16677200	Weak transcription	Right Atrium	heart
20	chr6:16670600-16681400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:16670600-16681800	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:16670800-16674800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:16670800-16674800	Weak transcription	HUVEC	blood vessel
24	chr6:16670800-16674800	Weak transcription	Osteobl	bone
25	chr6:16670800-16675000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:16670800-16675000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:16670800-16685200	Weak transcription	Primary T cells from cord blood	blood
28	chr6:16671000-16675000	Weak transcription	NH-A	brain
29	chr6:16671000-16684000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:16671200-16675000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:16671200-16683800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:16671400-16675000	Weak transcription	Brain Angular Gyrus	brain
33	chr6:16671400-16681200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:16671400-16694800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr6:16671600-16674800	Weak transcription	Brain Substantia Nigra	brain
36	chr6:16671600-16675000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:16671600-16680800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:16671600-16681400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:16671600-16681800	Weak transcription	Fetal Brain Male	brain
40	chr6:16671800-16680200	Weak transcription	Primary B cells from cord blood	blood
41	chr6:16671800-16687600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr6:16672000-16674800	Weak transcription	Adipose Nuclei	Adipose
43	chr6:16672000-16681400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:16672400-16674800	Weak transcription	Fetal Stomach	stomach
45	chr6:16672400-16675000	Weak transcription	NHLF	lung
46	chr6:16672400-16677200	Weak transcription	Brain Germinal Matrix	brain
47	chr6:16672400-16680800	Weak transcription	HMEC	breast
48	chr6:16672600-16675000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:16672600-16677000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr6:16672600-16677200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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