Variant report

Variant	rs9350548
Chromosome Location	chr6:75148631-75148632
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs9343156	0.81[ASN][1000 genomes]
rs9343157	0.81[ASN][1000 genomes]
rs9343158	0.81[ASN][1000 genomes]
rs9343159	0.82[ASN][1000 genomes]
rs9343161	0.81[ASN][1000 genomes]
rs9343168	0.86[ASN][1000 genomes]
rs9350544	0.81[ASN][1000 genomes]
rs9350545	0.81[ASN][1000 genomes]
rs9350546	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9350549	0.81[ASN][1000 genomes]
rs9352117	0.82[ASN][1000 genomes]
rs9352118	0.81[ASN][1000 genomes]
rs9352120	0.81[ASN][1000 genomes]
rs9352122	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv35015	chr6:75031337-75154143	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757178	chr6:75060947-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886166	chr6:75082067-75155303	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886167	chr6:75102625-75175449	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886168	chr6:75112715-75166715	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75145400-75149000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:75148600-75149800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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