Variant report

Variant	rs9350901
Chromosome Location	chr6:81773807-81773808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1002314	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10485281	0.89[ASN][1000 genomes]
rs1342974	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1570052	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28720075	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4298304	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56299896	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72905700	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72907566	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7767824	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7771176	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9341837	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9344073	0.87[ASN][1000 genomes]
rs9344092	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9352902	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9352907	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9352917	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9359445	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9361699	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9361714	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830709	chr6:81615127-81793247	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886320	chr6:81670720-81960107	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv886321	chr6:81707510-81934605	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1016229	chr6:81722231-81881073	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv830710	chr6:81727702-81889039	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1033949	chr6:81731577-81872706	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv886322	chr6:81745936-81812816	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1021359	chr6:81763673-81819933	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv886323	chr6:81769638-81841444	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv886324	chr6:81769638-81848131	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv830711	chr6:81771575-81937222	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81770800-81774000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:81773400-81774000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:81773400-81774000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:81773800-81774000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:81773800-81774000	ZNF genes & repeats	Aorta	Aorta
6	chr6:81773800-81774600	Enhancers	H9 Cell Line	embryonic stem cell

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