Variant report

Variant	rs9352914
Chromosome Location	chr6:81700131-81700132
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10485280	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1114632	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12664048	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1337666	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1337667	0.85[EUR][1000 genomes]
rs1596426	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1884933	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2064867	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2064868	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2078490	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2166033	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2752960	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2786702	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs500554	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs525114	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6910354	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7738775	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7751041	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7762299	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7762306	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7762711	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7770169	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7770677	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7770832	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7770969	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9294184	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9294186	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9294188	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9294191	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9294192	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9294193	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9294195	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9341836	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9341839	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9344072	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9350889	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9350890	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9350891	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9352904	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9352905	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9352913	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9352915	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9352916	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9359446	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9361689	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9361691	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9361692	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9361693	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9361700	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9361701	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9361710	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9449207	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9449208	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9449209	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs985496	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs986068	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886318	chr6:81447367-81769538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1032130	chr6:81572030-81722231	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2762604	chr6:81593275-81742093	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428487	chr6:81607405-81742838	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv830709	chr6:81615127-81793247	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1033733	chr6:81641291-81728782	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv886319	chr6:81670720-81741457	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv886320	chr6:81670720-81960107	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9352914	ME1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81697800-81700600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:81699000-81700600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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