Variant report

Variant	rs9356973
Chromosome Location	chr6:25302810-25302811
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:25277631..25279275-chr6:25301822..25304144,2	MCF-7	breast:
2	chr6:25302209..25304566-chr6:25321319..25323421,2	MCF-7	breast:
3	chr6:25279234..25282196-chr6:25302311..25304060,2	K562	blood:

Variant related genes	Relation type
ENSG00000079691	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12055533	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12196702	0.81[ASN][1000 genomes]
rs1989206	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2143022	0.97[ASN][1000 genomes]
rs2252012	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2328878	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2690109	0.81[ASN][1000 genomes]
rs2690115	0.84[ASN][1000 genomes]
rs2690120	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2690123	0.96[ASN][1000 genomes]
rs2690125	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2690127	0.94[ASN][1000 genomes]
rs2690129	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2690131	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2744290	0.96[ASN][1000 genomes]
rs2744296	0.96[ASN][1000 genomes]
rs2744299	0.97[ASN][1000 genomes]
rs2744302	0.82[ASN][1000 genomes]
rs2744303	0.81[ASN][1000 genomes]
rs4712908	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9348670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358850	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9358851	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9379751	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9467465	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025694	chr6:25136860-25309450	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv883484	chr6:25237288-25303100	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25290400-25313400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:25292200-25303000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:25294200-25311200	Weak transcription	Lung	lung
4	chr6:25297200-25303200	Weak transcription	Primary T cells from cord blood	blood
5	chr6:25297400-25303000	Weak transcription	Gastric	stomach
6	chr6:25297400-25304600	Weak transcription	Left Ventricle	heart
7	chr6:25298000-25303200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:25298000-25311800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:25298200-25303000	Weak transcription	Fetal Kidney	kidney
10	chr6:25298600-25303000	Enhancers	Aorta	Aorta
11	chr6:25298600-25303400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:25300600-25303200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr6:25300600-25303600	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr6:25300600-25304000	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:25300800-25303000	Enhancers	Small Intestine	intestine
16	chr6:25300800-25303400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:25300800-25304000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:25301000-25303000	Enhancers	Adipose Nuclei	Adipose
19	chr6:25301000-25304000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:25301200-25303000	Enhancers	Fetal Lung	lung
21	chr6:25301200-25303200	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr6:25301200-25303800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr6:25301200-25303800	Enhancers	Primary hematopoietic stem cells	blood
24	chr6:25301200-25305400	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr6:25301400-25303400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:25301400-25303800	Enhancers	Primary B cells from cord blood	blood
27	chr6:25301400-25313400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:25301600-25303400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:25301600-25304200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:25301600-25311600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:25301800-25304200	Enhancers	NHLF	lung
32	chr6:25301800-25305600	Enhancers	Fetal Intestine Large	intestine
33	chr6:25301800-25306000	Enhancers	Fetal Intestine Small	intestine
34	chr6:25302000-25303000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:25302000-25303000	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr6:25302000-25303000	Enhancers	NHDF-Ad	bronchial
37	chr6:25302000-25303200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:25302000-25303200	Enhancers	Fetal Heart	heart
39	chr6:25302000-25312800	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:25302200-25303000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr6:25302200-25303000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:25302200-25303200	Enhancers	Brain Anterior Caudate	brain
43	chr6:25302200-25303400	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr6:25302200-25303400	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr6:25302200-25303400	Enhancers	Brain Germinal Matrix	brain
46	chr6:25302400-25303000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:25302400-25303000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr6:25302400-25303000	Flanking Active TSS	A549	lung
49	chr6:25302400-25303200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:25302400-25303200	Enhancers	Ovary	ovary

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