Variant report

Variant	rs9358851
Chromosome Location	chr6:25312039-25312040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25298383..25300116-chr6:25311036..25313925,3	MCF-7	breast:
2	chr6:25307442..25309429-chr6:25310773..25313440,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12055533	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12196702	0.82[ASN][1000 genomes]
rs1989206	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2143022	0.97[ASN][1000 genomes]
rs2252012	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2328878	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2690109	0.82[ASN][1000 genomes]
rs2690115	0.84[ASN][1000 genomes]
rs2690120	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2690123	0.96[ASN][1000 genomes]
rs2690125	0.82[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2690127	0.93[ASN][1000 genomes]
rs2690129	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2690131	0.94[ASN][1000 genomes]
rs2744290	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2744296	0.96[ASN][1000 genomes]
rs2744299	0.97[ASN][1000 genomes]
rs2744302	0.82[ASN][1000 genomes]
rs2744303	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4712908	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9348670	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9356973	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9358850	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[ASN][1000 genomes]
rs9379751	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9467465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25290400-25313400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:25301400-25313400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:25302000-25312800	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:25302600-25312400	Weak transcription	Thymus	Thymus
5	chr6:25302800-25312200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:25303200-25314800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:25303400-25315400	Weak transcription	Fetal Kidney	kidney
8	chr6:25303800-25312400	Weak transcription	Adipose Nuclei	Adipose
9	chr6:25305000-25324400	Weak transcription	Left Ventricle	heart
10	chr6:25306600-25331400	Weak transcription	Spleen	Spleen
11	chr6:25308600-25312600	Weak transcription	Fetal Heart	heart
12	chr6:25309200-25313400	Weak transcription	Ovary	ovary
13	chr6:25310000-25312400	Enhancers	Small Intestine	intestine
14	chr6:25310000-25312600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:25310200-25312200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:25310200-25313000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:25310200-25313600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:25310200-25313800	Enhancers	Fetal Intestine Large	intestine
19	chr6:25310200-25314200	Enhancers	Fetal Intestine Small	intestine
20	chr6:25310200-25316800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:25310400-25312400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:25310400-25312600	Enhancers	NHDF-Ad	bronchial
23	chr6:25310400-25312800	Enhancers	HMEC	breast
24	chr6:25310400-25313800	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:25310400-25319400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr6:25310800-25315000	Weak transcription	Brain Anterior Caudate	brain
27	chr6:25311000-25312200	Enhancers	Right Atrium	heart
28	chr6:25311000-25312800	Enhancers	NHEK	skin
29	chr6:25311200-25312200	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr6:25311200-25312600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:25311200-25314000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:25311400-25312400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:25311400-25312600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:25311400-25313800	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr6:25311400-25313800	Enhancers	Stomach Mucosa	stomach
36	chr6:25311400-25313800	Enhancers	HSMM	muscle
37	chr6:25311400-25314400	Enhancers	Osteobl	bone
38	chr6:25311600-25312200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:25311600-25312600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:25311600-25313000	Flanking Active TSS	Hela-S3	cervix
41	chr6:25311600-25313200	Enhancers	HSMMtube	muscle
42	chr6:25311600-25313200	Enhancers	NHLF	lung
43	chr6:25311600-25313400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr6:25311600-25313800	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr6:25311600-25313800	Enhancers	H1 Cell Line	embryonic stem cell
46	chr6:25311600-25313800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:25311600-25313800	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr6:25311600-25313800	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr6:25311600-25313800	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr6:25311600-25313800	Enhancers	Rectal Mucosa Donor 29	rectum

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