Variant report

Variant	rs9357255
Chromosome Location	chr6:37761373-37761374
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37760526..37762581-chr6:37765798..37767816,2	MCF-7	breast:
2	chr6:37759642..37762006-chr6:37820086..37822847,3	MCF-7	breast:
3	chr6:37758354..37761850-chr6:37786421..37788597,3	K562	blood:
4	chr6:37756505..37762867-chr6:37772774..37778127,6	MCF-7	breast:
5	chr6:37761178..37763195-chr6:37774802..37776873,2	MCF-7	breast:
6	chr6:37742631..37746387-chr6:37760505..37763552,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1212636	0.86[CHD][hapmap]
rs12211975	0.88[CHD][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap]
rs259675	0.83[MEX][hapmap]
rs259721	0.86[CHD][hapmap]
rs259723	0.86[CHD][hapmap];0.83[MEX][hapmap]
rs4142102	0.81[JPT][hapmap]
rs4329108	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6458030	0.86[CHD][hapmap];0.83[MEX][hapmap]
rs6926280	0.82[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.80[YRI][hapmap]
rs9357256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9369022	0.88[CEU][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9470723	0.83[MEX][hapmap]
rs9470724	0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37758600-37761400	Enhancers	NHDF-Ad	bronchial
2	chr6:37758600-37762600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:37758800-37761600	Enhancers	Placenta	Placenta
4	chr6:37759200-37762400	Weak transcription	HSMMtube	muscle
5	chr6:37759200-37768400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:37759600-37762400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:37759600-37766000	Weak transcription	Lung	lung
8	chr6:37759600-37767200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:37759600-37767200	Weak transcription	Right Atrium	heart
10	chr6:37759800-37761400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:37759800-37761400	Enhancers	HepG2	liver
12	chr6:37759800-37762400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:37759800-37762400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:37759800-37762400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:37759800-37762400	Weak transcription	Psoas Muscle	Psoas
16	chr6:37759800-37762400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:37759800-37762400	Weak transcription	HSMM	muscle
18	chr6:37759800-37762400	Weak transcription	NHEK	skin
19	chr6:37759800-37762600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:37759800-37762600	Weak transcription	HMEC	breast
21	chr6:37759800-37762600	Weak transcription	NH-A	brain
22	chr6:37759800-37763800	Weak transcription	Liver	Liver
23	chr6:37759800-37764000	Weak transcription	Pancreas	Pancrea
24	chr6:37759800-37764200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:37759800-37768600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:37760000-37762600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:37760400-37761400	Enhancers	Osteobl	bone
28	chr6:37760600-37761600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:37760800-37761400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:37761000-37762400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:37761000-37762400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:37761000-37762600	Weak transcription	NHLF	lung
33	chr6:37761000-37764200	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:37761200-37762400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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