Variant report

Variant	rs6926280
Chromosome Location	chr6:37767685-37767686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37760526..37762581-chr6:37765798..37767816,2	MCF-7	breast:
2	chr6:37758926..37760720-chr6:37767100..37768812,2	K562	blood:
3	chr6:37761965..37764146-chr6:37767297..37769364,2	MCF-7	breast:
4	chr6:37765846..37768187-chr6:37771368..37772947,2	K562	blood:
5	chr6:37764796..37769141-chr6:37786360..37788768,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1212636	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12198360	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12211975	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12523829	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1979759	0.88[CHB][hapmap]
rs2180514	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs259672	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs259675	0.91[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap]
rs259676	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs259678	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap]
rs259683	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs259687	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs259693	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs259714	0.82[ASN][1000 genomes]
rs259717	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs259721	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs259722	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs259723	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4142102	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4711515	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4711522	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs6458030	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs67133782	0.96[ASN][1000 genomes]
rs6915506	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes]
rs6934617	0.81[CEU][hapmap]
rs6937655	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72849334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849338	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9349051	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9357255	0.82[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.80[YRI][hapmap]
rs9369022	0.89[YRI][hapmap]
rs9369024	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9369025	0.87[ASN][1000 genomes]
rs9380703	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380704	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9462374	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs9470714	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs9470723	0.91[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap]
rs9470724	0.91[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap]
rs9647620	1.00[CEU][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37759200-37768400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:37759800-37768600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:37766400-37768200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr6:37766400-37768800	Enhancers	Fetal Stomach	stomach
5	chr6:37766400-37775400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:37766800-37767800	Enhancers	Fetal Intestine Small	intestine
7	chr6:37767000-37767800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:37767000-37767800	Enhancers	Fetal Intestine Large	intestine
9	chr6:37767200-37767800	Enhancers	Aorta	Aorta
10	chr6:37767200-37767800	Enhancers	Liver	Liver
11	chr6:37767400-37768800	Enhancers	HepG2	liver
12	chr6:37767400-37775400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:37767400-37777000	Weak transcription	Right Atrium	heart

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