Variant report

Variant	rs9369025
Chromosome Location	chr6:37764696-37764697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1212636	0.82[ASN][1000 genomes]
rs12198360	0.89[ASN][1000 genomes]
rs12211975	0.85[ASN][1000 genomes]
rs12523829	0.88[ASN][1000 genomes]
rs259721	0.82[ASN][1000 genomes]
rs259722	0.82[ASN][1000 genomes]
rs259723	0.83[ASN][1000 genomes]
rs4142102	0.86[ASN][1000 genomes]
rs4711515	0.87[ASN][1000 genomes]
rs6458030	0.85[ASN][1000 genomes]
rs67133782	0.85[ASN][1000 genomes]
rs6926280	0.87[ASN][1000 genomes]
rs6937655	0.88[ASN][1000 genomes]
rs72849334	0.87[ASN][1000 genomes]
rs72849338	0.88[ASN][1000 genomes]
rs9349051	0.88[ASN][1000 genomes]
rs9369024	0.99[ASN][1000 genomes]
rs9380703	0.87[ASN][1000 genomes]
rs9380704	0.88[ASN][1000 genomes]
rs9470714	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37759200-37768400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:37759600-37766000	Weak transcription	Lung	lung
3	chr6:37759600-37767200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:37759600-37767200	Weak transcription	Right Atrium	heart
5	chr6:37759800-37768600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:37761600-37766200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:37762400-37766000	Enhancers	HepG2	liver
8	chr6:37763400-37766600	Weak transcription	HSMMtube	muscle
9	chr6:37764200-37765600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:37764200-37766400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:37764400-37766600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:37764600-37765600	Weak transcription	Liver	Liver
13	chr6:37764600-37766000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:37764600-37766000	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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