Variant report

Variant	rs9359385
Chromosome Location	chr6:80319015-80319016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:80319015..80321979-chr6:80327268..80328969,2	MCF-7	breast:
2	chr6:80309921..80312950-chr6:80318776..80321900,3	MCF-7	breast:
3	chr6:80318963..80320635-chr6:80343693..80345966,2	MCF-7	breast:
4	chr6:80318365..80321776-chr6:80322794..80325239,3	K562	blood:
5	chr6:80318741..80320286-chr6:80322794..80325541,2	K562	blood:
6	chr6:80313976..80315721-chr6:80316526..80319476,2	MCF-7	breast:
7	chr6:80311176..80314030-chr6:80317329..80319854,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13198837	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13206818	0.85[CHB][hapmap]
rs1351959	0.86[MEX][hapmap]
rs1354452	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[ASN][1000 genomes]
rs2009837	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2047896	0.81[CHB][hapmap]
rs2655662	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2655663	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2655683	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2655699	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2655700	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2655701	0.86[ASN][1000 genomes]
rs2812689	0.86[ASN][1000 genomes]
rs2812692	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs3747766	0.85[CHB][hapmap]
rs4599589	0.86[ASN][1000 genomes]
rs6915859	0.82[CHB][hapmap]
rs6930436	0.82[CHB][hapmap]
rs9294148	0.81[MEX][hapmap]
rs9341781	0.82[CHB][hapmap]
rs9343918	0.82[CHB][hapmap]
rs9352737	1.00[ASW][hapmap];0.90[MEX][hapmap];1.00[YRI][hapmap]
rs9352744	0.86[MEX][hapmap]
rs9352747	0.82[CHB][hapmap];0.86[MEX][hapmap]
rs9359382	0.82[CHB][hapmap]
rs9359383	0.87[CHB][hapmap]
rs9361538	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs9361539	0.86[ASN][1000 genomes]
rs9448748	0.80[ASN][1000 genomes]
rs958114	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv886301	chr6:80111104-80339088	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv886302	chr6:80111104-80355973	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1027388	chr6:80113449-80355973	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv830707	chr6:80134625-80325171	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1029259	chr6:80142754-80340332	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv1018318	chr6:80241029-80465282	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv886304	chr6:80294265-80355973	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80298600-80324200	Weak transcription	Right Ventricle	heart
2	chr6:80310600-80319200	Weak transcription	Psoas Muscle	Psoas
3	chr6:80311000-80324400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:80311200-80324400	Weak transcription	Pancreas	Pancrea
5	chr6:80312200-80319200	Enhancers	HSMM	muscle
6	chr6:80313400-80321800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:80313600-80321600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:80314800-80320600	Enhancers	Stomach Mucosa	stomach
9	chr6:80315000-80340600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:80315200-80320800	Enhancers	K562	blood
11	chr6:80315800-80320200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr6:80316000-80320400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:80316600-80320600	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr6:80316800-80320600	Enhancers	Fetal Intestine Large	intestine
15	chr6:80316800-80321000	Enhancers	Fetal Intestine Small	intestine
16	chr6:80317000-80323200	Weak transcription	Liver	Liver
17	chr6:80317200-80319400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:80317200-80319600	Enhancers	Duodenum Mucosa	Duodenum
19	chr6:80317200-80320400	Weak transcription	Ovary	ovary
20	chr6:80317400-80324400	Weak transcription	Left Ventricle	heart
21	chr6:80317600-80319400	Enhancers	Esophagus	oesophagus
22	chr6:80317800-80319200	Enhancers	Colonic Mucosa	Colon
23	chr6:80318000-80340200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:80318400-80319600	Flanking Active TSS	HepG2	liver
25	chr6:80318600-80319200	Enhancers	Fetal Heart	heart
26	chr6:80318600-80319400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:80318600-80322600	Weak transcription	Gastric	stomach
28	chr6:80319000-80319200	Enhancers	Small Intestine	intestine
29	chr6:80319000-80319600	Enhancers	A549	lung
30	chr6:80319000-80321400	Weak transcription	HSMMtube	muscle

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