Variant report

Variant	rs9364711
Chromosome Location	chr6:164406264-164406265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10428875	0.88[EUR][1000 genomes]
rs10484512	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10484513	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10484514	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10484515	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10945938	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10945939	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10945940	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10945941	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10945942	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10945944	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10945945	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12191111	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12192423	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12200803	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12209088	0.90[EUR][1000 genomes]
rs12209089	0.91[EUR][1000 genomes]
rs12215299	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12662000	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13193552	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1545107	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16895846	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1756	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2064791	0.87[ASN][1000 genomes]
rs34021940	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34091550	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34413611	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34561573	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34727935	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34994154	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35668088	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4304140	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4499903	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4709030	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4709031	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4709799	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4709800	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4709802	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4709803	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4709804	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs493605	0.91[EUR][1000 genomes]
rs526406	0.91[EUR][1000 genomes]
rs587114	0.91[EUR][1000 genomes]
rs587184	0.91[EUR][1000 genomes]
rs62435513	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62435541	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6455930	0.83[EUR][1000 genomes]
rs6455931	0.85[EUR][1000 genomes]
rs656371	0.84[ASN][1000 genomes]
rs717822	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs735858	0.88[EUR][1000 genomes]
rs735859	0.86[EUR][1000 genomes]
rs7451221	0.85[ASN][1000 genomes]
rs7751193	0.84[ASN][1000 genomes]
rs9356176	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs942009	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830858	chr6:164296054-164455743	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164393800-164413800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:164404800-164406400	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:164404800-164406400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:164404800-164406600	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:164404800-164406800	Weak transcription	Ovary	ovary
6	chr6:164404800-164407000	Weak transcription	Left Ventricle	heart
7	chr6:164404800-164407000	Weak transcription	Right Atrium	heart
8	chr6:164405000-164406400	Enhancers	Fetal Brain Male	brain
9	chr6:164405000-164407000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:164405000-164407000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:164405000-164407400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:164405200-164406800	Enhancers	NH-A	brain
13	chr6:164405200-164407000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:164405400-164406600	Weak transcription	Fetal Brain Female	brain
15	chr6:164405600-164406800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:164405600-164407800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:164405600-164409600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:164405600-164412800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:164405800-164406800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:164405800-164407000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:164405800-164412400	Weak transcription	Brain Anterior Caudate	brain
22	chr6:164406000-164406400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:164406000-164406600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:164406000-164406800	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:164406000-164407000	Weak transcription	Brain Germinal Matrix	brain
26	chr6:164406200-164406400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:164406200-164406600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:164406200-164407800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:164406200-164407800	Enhancers	Pancreas	Pancrea

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