Variant report

Variant	rs9364852
Chromosome Location	chr6:166930424-166930425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1041919	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1041920	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1573746	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2157485	0.82[ASN][1000 genomes]
rs2157487	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2187911	0.91[CHB][hapmap]
rs3778417	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3799662	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs395475	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs743977	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs743978	0.83[ASN][1000 genomes]
rs763188	0.84[ASN][1000 genomes]
rs9348145	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs9366025	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1806956	chr6:166928580-166938431	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166901000-166954800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:166902200-166954400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:166902600-166952800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:166909600-166943800	Weak transcription	Colonic Mucosa	Colon
5	chr6:166912200-166931200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:166913000-166952000	Weak transcription	Primary T cells from cord blood	blood
7	chr6:166916200-166954200	Weak transcription	Right Atrium	heart
8	chr6:166916400-166940400	Weak transcription	Fetal Heart	heart
9	chr6:166917200-166932000	Weak transcription	Primary B cells from cord blood	blood
10	chr6:166918400-166931400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:166921400-166943600	Weak transcription	Fetal Lung	lung
12	chr6:166921600-166932000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:166921600-166932000	Weak transcription	Fetal Kidney	kidney
14	chr6:166921600-166937400	Weak transcription	Fetal Brain Male	brain
15	chr6:166923000-166931400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:166923000-166937200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:166923000-166940400	Weak transcription	Aorta	Aorta
18	chr6:166923000-166943800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:166923200-166931200	Weak transcription	Brain Germinal Matrix	brain
20	chr6:166923200-166932200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:166923200-166940200	Weak transcription	Ovary	ovary
22	chr6:166923200-166943200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:166923200-166943800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:166923600-166936800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:166923800-166944400	Weak transcription	Psoas Muscle	Psoas
26	chr6:166923800-166953000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:166925000-166940400	Weak transcription	Adipose Nuclei	Adipose
28	chr6:166927200-166938000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:166928200-166930600	Genic enhancers	NHLF	lung
30	chr6:166928400-166930600	Enhancers	Brain Substantia Nigra	brain
31	chr6:166928400-166938400	Weak transcription	Right Ventricle	heart
32	chr6:166928800-166931000	Weak transcription	Fetal Intestine Small	intestine
33	chr6:166928800-166935800	Weak transcription	Gastric	stomach
34	chr6:166928800-166935800	Weak transcription	Pancreas	Pancrea
35	chr6:166928800-166936800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:166928800-166943400	Weak transcription	Fetal Brain Female	brain
37	chr6:166929000-166932000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr6:166929000-166938000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:166929000-166943400	Weak transcription	Liver	Liver
40	chr6:166929200-166931400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:166929200-166931600	Weak transcription	HSMMtube	muscle
42	chr6:166929200-166935200	Weak transcription	Fetal Muscle Leg	muscle
43	chr6:166929200-166935400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:166929400-166943000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:166929600-166937400	Weak transcription	HUVEC	blood vessel
46	chr6:166929600-166938200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:166929600-166942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:166929600-166954000	Weak transcription	HSMM	muscle
49	chr6:166929600-166955600	Weak transcription	HMEC	breast
50	chr6:166930000-166934800	Weak transcription	Osteobl	bone

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