Variant report

Variant	rs9365579
Chromosome Location	chr6:164009030-164009031
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163881425..163884051-chr6:164006654..164009076,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL078585.1-16	chr6:164008747-164009197	ENSG00000228692.2
2	lnc-QKI-1	chr6:164008744-164009197	XLOC_005530

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4709725	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9347768	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163998200-164010800	Enhancers	Brain Cingulate Gyrus	brain
2	chr6:164003800-164010000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:164005200-164009600	Enhancers	Brain Substantia Nigra	brain
4	chr6:164006400-164009200	Enhancers	HUVEC	blood vessel
5	chr6:164006800-164010000	Enhancers	HMEC	breast
6	chr6:164007000-164009800	Enhancers	Hela-S3	cervix
7	chr6:164007200-164009600	Enhancers	Right Ventricle	heart
8	chr6:164007200-164010200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:164007200-164010400	Enhancers	HSMMtube	muscle
10	chr6:164007400-164009400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:164007400-164009600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:164007400-164011000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:164007600-164009200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:164007600-164009200	Weak transcription	Brain Anterior Caudate	brain
15	chr6:164007600-164009400	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:164007600-164009400	Enhancers	K562	blood
17	chr6:164007600-164009600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:164007600-164009600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:164007800-164009400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:164007800-164010000	Enhancers	Lung	lung
21	chr6:164007800-164010600	Weak transcription	Fetal Heart	heart
22	chr6:164008000-164009800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:164008200-164009800	Weak transcription	Psoas Muscle	Psoas
24	chr6:164008200-164011400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:164008400-164010000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:164008600-164009600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:164008600-164009800	Enhancers	NHEK	skin
28	chr6:164008600-164010000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:164008600-164010000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:164008600-164010200	Enhancers	Brain Angular Gyrus	brain
31	chr6:164008600-164010200	Enhancers	NH-A	brain
32	chr6:164008800-164009400	Enhancers	Brain Hippocampus Middle	brain
33	chr6:164008800-164009400	Enhancers	NHDF-Ad	bronchial
34	chr6:164008800-164009800	Enhancers	Left Ventricle	heart
35	chr6:164008800-164010000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:164008800-164010000	Enhancers	Fetal Muscle Trunk	muscle
37	chr6:164009000-164009200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:164009000-164009200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:164009000-164009200	Enhancers	A549	lung
40	chr6:164009000-164009200	Enhancers	GM12878-XiMat	blood
41	chr6:164009000-164010000	Enhancers	HSMM	muscle

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