Variant report

Variant	rs9367015
Chromosome Location	chr6:39476315-39476316
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11961693	0.86[ASN][1000 genomes]
rs11968704	0.85[ASN][1000 genomes]
rs1546910	0.89[ASN][1000 genomes]
rs17457401	0.89[ASN][1000 genomes]
rs2073134	0.91[ASN][1000 genomes]
rs2235817	0.86[ASN][1000 genomes]
rs2273063	0.83[ASN][1000 genomes]
rs4446568	0.86[ASN][1000 genomes]
rs4482968	0.85[ASN][1000 genomes]
rs4482969	0.85[ASN][1000 genomes]
rs4714256	0.88[ASN][1000 genomes]
rs55860200	0.81[ASN][1000 genomes]
rs57703896	0.81[ASN][1000 genomes]
rs58087685	0.89[ASN][1000 genomes]
rs59724542	0.81[ASN][1000 genomes]
rs6930913	0.84[ASN][1000 genomes]
rs73412749	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9296300	0.96[ASN][1000 genomes]
rs9357306	0.91[ASN][1000 genomes]
rs9357307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357308	0.86[ASN][1000 genomes]
rs9357309	0.84[ASN][1000 genomes]
rs9367012	0.85[ASN][1000 genomes]
rs9367014	0.91[ASN][1000 genomes]
rs9367016	0.85[ASN][1000 genomes]
rs9367017	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9369123	0.81[ASN][1000 genomes]
rs9380871	0.86[ASN][1000 genomes]
rs9380872	0.86[ASN][1000 genomes]
rs9380873	0.86[ASN][1000 genomes]
rs9380874	0.89[ASN][1000 genomes]
rs9380875	0.83[ASN][1000 genomes]
rs9394601	0.83[ASN][1000 genomes]
rs9394602	0.84[ASN][1000 genomes]
rs9394603	0.84[ASN][1000 genomes]
rs9394606	0.83[ASN][1000 genomes]
rs9462553	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9471117	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9471118	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39472000-39477800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:39476000-39476800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:39476000-39477200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:39476200-39476400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:39476200-39476600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chr6:39476200-39476600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:39476200-39476800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:39476200-39476800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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