Variant report

Variant	rs55860200
Chromosome Location	chr6:39440732-39440733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11962587	0.82[ASN][1000 genomes]
rs11969395	0.82[ASN][1000 genomes]
rs1546910	0.82[ASN][1000 genomes]
rs17457401	0.82[ASN][1000 genomes]
rs2026670	0.88[ASN][1000 genomes]
rs2073134	0.84[ASN][1000 genomes]
rs28533484	0.80[ASN][1000 genomes]
rs4714256	0.93[ASN][1000 genomes]
rs58087685	0.82[ASN][1000 genomes]
rs9296299	0.82[ASN][1000 genomes]
rs9296300	0.85[ASN][1000 genomes]
rs9357306	0.84[ASN][1000 genomes]
rs9357307	0.81[ASN][1000 genomes]
rs9367014	0.84[ASN][1000 genomes]
rs9367015	0.81[ASN][1000 genomes]
rs9380874	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv428145	chr6:39404129-39460795	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39435400-39444200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:39439600-39441000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:39440200-39440800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:39440400-39442400	Weak transcription	Adipose Nuclei	Adipose
5	chr6:39440600-39442400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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