Variant report

Variant	rs28533484
Chromosome Location	chr6:39438470-39438471
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10947813	0.95[ASN][1000 genomes]
rs11961693	0.85[ASN][1000 genomes]
rs11962587	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11964924	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11968704	0.84[ASN][1000 genomes]
rs11969059	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11969395	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1410488	0.86[ASN][1000 genomes]
rs1927774	0.86[ASN][1000 genomes]
rs1927775	0.86[ASN][1000 genomes]
rs1952362	0.86[ASN][1000 genomes]
rs2235817	0.85[ASN][1000 genomes]
rs2395727	0.86[ASN][1000 genomes]
rs35553201	0.88[ASN][1000 genomes]
rs4464790	0.88[ASN][1000 genomes]
rs4482968	0.84[ASN][1000 genomes]
rs4482969	0.84[ASN][1000 genomes]
rs4711598	0.89[ASN][1000 genomes]
rs4714253	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4714254	0.86[ASN][1000 genomes]
rs4714255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4714256	0.84[ASN][1000 genomes]
rs55860200	0.80[ASN][1000 genomes]
rs59724542	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9296299	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9349120	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9357305	0.87[ASN][1000 genomes]
rs9357308	0.85[ASN][1000 genomes]
rs9357309	0.83[ASN][1000 genomes]
rs9367009	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9367012	0.84[ASN][1000 genomes]
rs9367016	0.84[ASN][1000 genomes]
rs9369117	0.87[ASN][1000 genomes]
rs9369124	0.81[ASN][1000 genomes]
rs9380861	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9380862	0.86[ASN][1000 genomes]
rs9380863	0.87[ASN][1000 genomes]
rs9380864	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9380865	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380871	0.85[ASN][1000 genomes]
rs9380872	0.85[ASN][1000 genomes]
rs9380873	0.85[ASN][1000 genomes]
rs9394592	0.95[ASN][1000 genomes]
rs9394595	0.97[ASN][1000 genomes]
rs9394600	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9394601	0.81[ASN][1000 genomes]
rs9394602	0.83[ASN][1000 genomes]
rs9394603	0.83[ASN][1000 genomes]
rs9471103	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv428145	chr6:39404129-39460795	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39435400-39444200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:39437800-39439200	Enhancers	Fetal Lung	lung
3	chr6:39438400-39438800	Weak transcription	Right Atrium	heart

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