Variant report

Variant	rs11969059
Chromosome Location	chr6:39455345-39455346
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39449098..39452096-chr6:39454798..39457343,2	K562	blood:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10947813	0.90[ASN][1000 genomes]
rs11961693	0.92[ASN][1000 genomes]
rs11962587	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11964924	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968279	0.84[ASN][1000 genomes]
rs11968704	0.95[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs11969395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12664369	0.84[CHB][hapmap]
rs1410488	0.81[ASN][1000 genomes]
rs1546910	0.85[CHB][hapmap]
rs16892158	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1927774	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1927775	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1952362	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2038198	0.84[CHB][hapmap]
rs2073134	0.85[CHB][hapmap]
rs2235817	0.95[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs2273063	0.94[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2395727	0.81[ASN][1000 genomes]
rs28533484	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35553201	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3736735	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs4236064	0.83[CHB][hapmap]
rs4464790	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4482968	0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4482969	0.91[ASN][1000 genomes]
rs4540261	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs4605875	0.82[ASN][1000 genomes]
rs4711598	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4714253	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4714254	0.81[ASN][1000 genomes]
rs4714255	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4714256	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs56951565	0.83[ASN][1000 genomes]
rs57703896	0.87[ASN][1000 genomes]
rs59724542	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6901155	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs72850669	0.80[AMR][1000 genomes]
rs9296299	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9296300	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs9349120	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9357305	0.82[ASN][1000 genomes]
rs9357307	0.84[CHB][hapmap]
rs9357308	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs9357309	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs9367008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9367009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9367012	0.94[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs9367016	0.91[ASN][1000 genomes]
rs9369117	0.82[ASN][1000 genomes]
rs9369119	0.94[CHB][hapmap]
rs9369123	0.87[ASN][1000 genomes]
rs9369124	0.85[ASN][1000 genomes]
rs9380861	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9380862	0.81[ASN][1000 genomes]
rs9380863	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs9380864	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9380865	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9380867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9380868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9380871	0.92[ASN][1000 genomes]
rs9380872	0.92[ASN][1000 genomes]
rs9380873	0.94[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs9380874	0.84[CHB][hapmap]
rs9380877	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs9380880	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs9394592	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9394594	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9394595	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9394598	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9394599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9394600	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394601	0.88[ASN][1000 genomes]
rs9394602	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs9394603	0.90[ASN][1000 genomes]
rs9394606	0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs9394607	0.81[ASN][1000 genomes]
rs9394608	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs9394609	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs9394611	0.84[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs9394614	0.84[CHB][hapmap]
rs9462553	0.89[CHB][hapmap]
rs9471103	0.81[ASN][1000 genomes]
rs9471113	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv428145	chr6:39404129-39460795	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39455000-39455400	Enhancers	Aorta	Aorta
2	chr6:39455000-39455400	Enhancers	Brain Hippocampus Middle	brain
3	chr6:39455000-39455400	Enhancers	Lung	lung
4	chr6:39455000-39455400	Enhancers	Right Atrium	heart
5	chr6:39455000-39456400	Enhancers	Stomach Smooth Muscle	stomach
6	chr6:39455200-39455400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:39455200-39456400	Enhancers	Brain Angular Gyrus	brain
8	chr6:39455200-39462800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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