Variant report

Variant	rs9380864
Chromosome Location	chr6:39407831-39407832
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10947813	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11961693	0.81[ASN][1000 genomes]
rs11962587	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11964924	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11968704	0.84[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs11969059	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11969395	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1410488	0.91[ASN][1000 genomes]
rs16892158	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1927774	0.89[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs1927775	0.90[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs1952362	0.89[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs2026670	0.89[CHB][hapmap]
rs2235817	0.84[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2273063	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs2395727	0.91[ASN][1000 genomes]
rs28533484	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35553201	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3736735	0.86[JPT][hapmap]
rs4236064	0.94[CHB][hapmap]
rs4464790	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4482968	0.84[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs4482969	0.81[ASN][1000 genomes]
rs4540261	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs4711598	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4714251	0.85[CEU][hapmap]
rs4714253	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4714254	0.91[ASN][1000 genomes]
rs4714255	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4714256	0.89[CHB][hapmap]
rs59724542	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72850669	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9296298	0.84[CHB][hapmap]
rs9296299	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9296300	0.84[CHB][hapmap]
rs9349120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357305	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9357308	0.83[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs9357309	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs9367006	0.85[CEU][hapmap]
rs9367008	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9367009	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9367012	0.83[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs9367016	0.81[ASN][1000 genomes]
rs9369117	0.90[ASN][1000 genomes]
rs9369119	0.84[CHB][hapmap]
rs9380861	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380862	0.91[ASN][1000 genomes]
rs9380863	0.90[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs9380865	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380867	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9380868	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9380871	0.81[ASN][1000 genomes]
rs9380872	0.81[ASN][1000 genomes]
rs9380873	0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs9380877	0.86[JPT][hapmap]
rs9394592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9394594	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9394595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9394598	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9394599	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9394600	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9394602	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs9394606	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs9394608	0.86[JPT][hapmap]
rs9394609	0.86[JPT][hapmap]
rs9394611	0.86[JPT][hapmap]
rs9471103	0.91[ASN][1000 genomes]
rs9471113	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv428145	chr6:39404129-39460795	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39400400-39409200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:39407600-39408200	Enhancers	HUVEC	blood vessel
3	chr6:39407800-39408600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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