Variant report

Variant	rs4236064
Chromosome Location	chr6:39414027-39414028
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10947813	0.83[ASN][1000 genomes]
rs11962587	0.89[CHB][hapmap]
rs11969059	0.83[CHB][hapmap]
rs1546910	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs16892158	0.89[CHB][hapmap]
rs1927774	0.83[CHB][hapmap];0.85[CHD][hapmap]
rs1927775	0.83[CHB][hapmap]
rs1952362	0.83[CHB][hapmap];0.85[CHD][hapmap];0.89[YRI][hapmap]
rs2026670	0.94[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2073134	0.80[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap]
rs2273063	0.88[CHD][hapmap]
rs28533484	0.82[ASN][1000 genomes]
rs4540261	0.89[CHB][hapmap];0.97[CHD][hapmap]
rs4711598	0.94[CHB][hapmap];0.94[CHD][hapmap]
rs4714253	0.94[CHB][hapmap]
rs4714255	0.89[CHB][hapmap];0.94[CHD][hapmap];0.84[ASN][1000 genomes]
rs4714256	0.84[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55860200	0.86[ASN][1000 genomes]
rs6458116	0.89[YRI][hapmap]
rs6930913	0.83[JPT][hapmap]
rs9296298	0.89[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs9296299	0.89[CHB][hapmap];0.94[CHD][hapmap]
rs9296300	0.89[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];0.88[ASN][1000 genomes]
rs9349120	0.94[CHB][hapmap];0.94[CHD][hapmap];0.87[ASN][1000 genomes]
rs9357307	0.83[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs9367008	0.83[CHB][hapmap]
rs9367009	0.83[CHB][hapmap]
rs9367014	0.83[JPT][hapmap]
rs9367015	0.84[ASN][1000 genomes]
rs9369119	0.94[ASW][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap]
rs9380861	0.84[ASN][1000 genomes]
rs9380863	0.83[CHB][hapmap]
rs9380864	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs9380865	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs9380867	0.84[CHB][hapmap]
rs9380868	0.87[CHB][hapmap]
rs9380874	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs9380880	0.82[CHD][hapmap]
rs9394592	0.94[CHB][hapmap];0.94[CHD][hapmap];0.84[ASN][1000 genomes]
rs9394594	0.94[CHB][hapmap];0.94[CHD][hapmap]
rs9394595	0.94[CHB][hapmap];0.94[CHD][hapmap];0.84[ASN][1000 genomes]
rs9394599	0.83[CHB][hapmap];0.97[CHD][hapmap]
rs9462553	0.83[CHB][hapmap];0.80[CHD][hapmap];0.88[JPT][hapmap]
rs9471113	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9471118	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv428145	chr6:39404129-39460795	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4236064	RRP36	cis	cerebellum	SCAN
rs4236064	CCND3	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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