Variant report

Variant	rs9369119
Chromosome Location	chr6:39445801-39445802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11962587	0.89[CHB][hapmap]
rs11964924	0.89[CHB][hapmap]
rs11968704	0.89[CHB][hapmap]
rs11969059	0.94[CHB][hapmap]
rs11969395	0.80[ASN][1000 genomes]
rs1546910	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs16892158	0.89[CHB][hapmap]
rs1927774	0.82[CHD][hapmap]
rs1952362	0.82[CHD][hapmap];0.85[YRI][hapmap]
rs2026670	0.83[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2073134	0.90[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs2235817	0.89[CHB][hapmap]
rs2273063	0.89[CHB][hapmap];0.85[CHD][hapmap]
rs4236064	0.94[ASW][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap]
rs4482968	0.89[CHB][hapmap]
rs4540261	1.00[CHB][hapmap];0.94[CHD][hapmap];0.80[MEX][hapmap]
rs4711598	0.84[CHB][hapmap];0.91[CHD][hapmap]
rs4714253	0.84[CHB][hapmap]
rs4714255	0.89[CHB][hapmap];0.91[CHD][hapmap]
rs4714256	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55860200	0.86[ASN][1000 genomes]
rs6458116	0.85[YRI][hapmap]
rs6901155	0.84[CHB][hapmap]
rs6919556	0.81[CHB][hapmap]
rs6930913	0.83[JPT][hapmap]
rs9296298	0.88[CHD][hapmap];0.94[JPT][hapmap]
rs9296299	0.89[CHB][hapmap];0.91[CHD][hapmap]
rs9296300	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9349120	0.84[CHB][hapmap];0.91[CHD][hapmap]
rs9357306	0.80[ASN][1000 genomes]
rs9357307	0.94[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs9357308	0.89[CHB][hapmap]
rs9357309	0.89[CHB][hapmap]
rs9367008	0.94[CHB][hapmap]
rs9367009	0.94[CHB][hapmap]
rs9367012	0.89[CHB][hapmap]
rs9367014	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs9367015	0.87[ASN][1000 genomes]
rs9367017	0.83[ASN][1000 genomes]
rs9369122	0.81[CHB][hapmap]
rs9380864	0.84[CHB][hapmap]
rs9380865	0.84[CHB][hapmap]
rs9380867	0.92[CHB][hapmap]
rs9380868	0.94[CHB][hapmap]
rs9380873	0.89[CHB][hapmap]
rs9380874	0.89[CHB][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap]
rs9394592	0.84[CHB][hapmap];0.91[CHD][hapmap]
rs9394594	0.84[CHB][hapmap];0.91[CHD][hapmap]
rs9394595	0.84[CHB][hapmap];0.91[CHD][hapmap]
rs9394598	0.89[CHB][hapmap]
rs9394599	0.94[CHB][hapmap];0.94[CHD][hapmap]
rs9394600	0.89[CHB][hapmap]
rs9394602	0.89[CHB][hapmap]
rs9394606	0.89[CHB][hapmap]
rs9462553	0.94[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs9471113	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9471118	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv428145	chr6:39404129-39460795	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9369119	SRPK1	cis	cerebellum	SCAN
rs9369119	CCND3	cis	cerebellum	SCAN
rs9369119	ETV7	cis	parietal	SCAN
rs9369119	RRP36	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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