Variant report

Variant	rs9471113
Chromosome Location	chr6:39431229-39431230
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10947813	0.84[ASN][1000 genomes]
rs11962587	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs11964924	0.84[CHB][hapmap]
rs11968704	0.84[CHB][hapmap]
rs11969059	0.89[CHB][hapmap]
rs11969395	0.81[ASN][1000 genomes]
rs1546910	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs16892158	0.95[CHB][hapmap]
rs1952362	0.88[YRI][hapmap]
rs2026670	0.89[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2073134	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2235817	0.84[CHB][hapmap]
rs2273063	0.83[CHB][hapmap]
rs28533484	0.84[ASN][1000 genomes]
rs4236064	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4482968	0.84[CHB][hapmap]
rs4540261	0.94[CHB][hapmap]
rs4711598	0.89[CHB][hapmap]
rs4714253	0.89[CHB][hapmap]
rs4714255	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs4714256	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55860200	0.89[ASN][1000 genomes]
rs6458116	0.89[YRI][hapmap]
rs6930913	0.82[JPT][hapmap]
rs9296298	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs9296299	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs9296300	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9349120	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs9357307	0.84[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs9357308	0.84[CHB][hapmap]
rs9357309	0.84[CHB][hapmap]
rs9367008	0.89[CHB][hapmap]
rs9367009	0.89[CHB][hapmap]
rs9367012	0.84[CHB][hapmap]
rs9367014	0.83[JPT][hapmap]
rs9367015	0.84[ASN][1000 genomes]
rs9369119	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9380861	0.83[ASN][1000 genomes]
rs9380864	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs9380865	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs9380867	0.93[CHB][hapmap]
rs9380868	0.88[CHB][hapmap]
rs9380873	0.84[CHB][hapmap]
rs9380874	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs9394592	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs9394594	0.89[CHB][hapmap]
rs9394595	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs9394598	0.84[CHB][hapmap]
rs9394599	0.89[CHB][hapmap]
rs9394600	0.84[CHB][hapmap]
rs9394602	0.84[CHB][hapmap]
rs9394606	0.84[CHB][hapmap]
rs9462553	0.89[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs9471118	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv428145	chr6:39404129-39460795	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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