Variant report

Variant	rs9394594
Chromosome Location	chr6:39414815-39414816
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11752294	1.00[EUR][1000 genomes]
rs11753576	0.87[EUR][1000 genomes]
rs11755172	1.00[EUR][1000 genomes]
rs11755538	1.00[EUR][1000 genomes]
rs11962587	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11964924	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11968704	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs11969059	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs16892158	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs17352506	1.00[EUR][1000 genomes]
rs17352632	1.00[EUR][1000 genomes]
rs17352709	1.00[EUR][1000 genomes]
rs17352737	1.00[EUR][1000 genomes]
rs17353038	1.00[EUR][1000 genomes]
rs17430612	1.00[EUR][1000 genomes]
rs17430640	0.87[EUR][1000 genomes]
rs17456288	1.00[EUR][1000 genomes]
rs17456316	1.00[EUR][1000 genomes]
rs17456719	1.00[EUR][1000 genomes]
rs17456754	1.00[EUR][1000 genomes]
rs1927774	0.89[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap]
rs1927775	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs1952362	0.89[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap]
rs2026670	0.89[CHB][hapmap];0.86[CHD][hapmap]
rs2235817	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs2273063	0.83[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap]
rs3736735	0.86[JPT][hapmap]
rs4236064	0.94[CHB][hapmap];0.94[CHD][hapmap]
rs4482968	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs4540261	0.84[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap]
rs4711598	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4714253	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4714255	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap]
rs4714256	0.89[CHB][hapmap];0.94[CHD][hapmap]
rs61748649	1.00[EUR][1000 genomes]
rs7738282	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7740187	0.88[LWK][hapmap];1.00[YRI][hapmap]
rs7744882	0.88[LWK][hapmap];1.00[YRI][hapmap]
rs7745664	1.00[YRI][hapmap]
rs7773461	1.00[YRI][hapmap]
rs9296298	0.84[CHB][hapmap];0.86[CHD][hapmap]
rs9296299	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap]
rs9296300	0.84[CHB][hapmap];0.91[CHD][hapmap]
rs9349120	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap]
rs9357308	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs9357309	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs9367008	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9367009	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9367012	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs9369119	0.84[CHB][hapmap];0.91[CHD][hapmap]
rs9380863	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs9380864	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9380865	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9380867	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9380868	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9380873	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs9380877	0.86[JPT][hapmap]
rs9380880	0.82[CHD][hapmap]
rs9394592	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs9394595	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9394598	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs9394599	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs9394600	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs9394602	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs9394606	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs9394608	0.86[JPT][hapmap]
rs9394609	0.86[JPT][hapmap]
rs9394611	0.86[JPT][hapmap]
rs9471113	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv428145	chr6:39404129-39460795	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39414800-39415000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:39414800-39415200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:39414800-39415200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:39414800-39415200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:39414800-39415200	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links