Variant report

Variant	rs10947813
Chromosome Location	chr6:39422606-39422607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39410899..39413477-chr6:39419818..39422781,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11961693	0.82[ASN][1000 genomes]
rs11962587	0.93[ASN][1000 genomes]
rs11964924	0.90[ASN][1000 genomes]
rs11968704	0.81[ASN][1000 genomes]
rs11969059	0.90[ASN][1000 genomes]
rs11969395	0.92[ASN][1000 genomes]
rs1410488	0.87[ASN][1000 genomes]
rs1927774	0.87[ASN][1000 genomes]
rs1927775	0.87[ASN][1000 genomes]
rs1952362	0.87[ASN][1000 genomes]
rs2235817	0.82[ASN][1000 genomes]
rs2395727	0.87[ASN][1000 genomes]
rs28533484	0.95[ASN][1000 genomes]
rs35553201	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4464790	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4482968	0.81[ASN][1000 genomes]
rs4482969	0.81[ASN][1000 genomes]
rs4711598	0.90[ASN][1000 genomes]
rs4714253	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4714254	0.87[ASN][1000 genomes]
rs4714255	0.97[ASN][1000 genomes]
rs59724542	0.86[ASN][1000 genomes]
rs72850669	0.80[AMR][1000 genomes]
rs9296299	0.93[ASN][1000 genomes]
rs9349120	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9357305	0.92[ASN][1000 genomes]
rs9357308	0.82[ASN][1000 genomes]
rs9357309	0.81[ASN][1000 genomes]
rs9367009	0.90[ASN][1000 genomes]
rs9367012	0.81[ASN][1000 genomes]
rs9367016	0.81[ASN][1000 genomes]
rs9369117	0.86[ASN][1000 genomes]
rs9380861	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9380862	0.87[ASN][1000 genomes]
rs9380863	0.88[ASN][1000 genomes]
rs9380864	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9380865	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9380871	0.82[ASN][1000 genomes]
rs9380872	0.82[ASN][1000 genomes]
rs9380873	0.82[ASN][1000 genomes]
rs9394592	0.95[ASN][1000 genomes]
rs9394595	0.98[ASN][1000 genomes]
rs9394600	0.90[ASN][1000 genomes]
rs9394602	0.81[ASN][1000 genomes]
rs9394603	0.81[ASN][1000 genomes]
rs9471103	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv428145	chr6:39404129-39460795	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39422400-39422800	Active TSS	HUES6 Cell Line	embryonic stem cell

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