Variant report

Variant	rs35553201
Chromosome Location	chr6:39404949-39404950
allele	AT/CC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10947813	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11962587	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11964924	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11969059	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11969395	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1410488	0.86[ASN][1000 genomes]
rs1927774	0.86[ASN][1000 genomes]
rs1927775	0.86[ASN][1000 genomes]
rs1952362	0.86[ASN][1000 genomes]
rs2395727	0.86[ASN][1000 genomes]
rs28533484	0.88[ASN][1000 genomes]
rs4464790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711598	0.88[ASN][1000 genomes]
rs4714253	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4714254	0.86[ASN][1000 genomes]
rs4714255	0.90[ASN][1000 genomes]
rs72850669	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9296299	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9349120	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9357305	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9367009	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9369117	0.85[ASN][1000 genomes]
rs9380861	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380862	0.86[ASN][1000 genomes]
rs9380863	0.86[ASN][1000 genomes]
rs9380864	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380865	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9394592	0.94[ASN][1000 genomes]
rs9394595	0.91[ASN][1000 genomes]
rs9394600	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9471103	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv428145	chr6:39404129-39460795	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39400400-39409200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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