Variant report

Variant	rs9380862
Chromosome Location	chr6:39404162-39404163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10947813	0.87[ASN][1000 genomes]
rs11962587	0.84[ASN][1000 genomes]
rs11964924	0.81[ASN][1000 genomes]
rs11969059	0.81[ASN][1000 genomes]
rs11969395	0.83[ASN][1000 genomes]
rs1410488	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927774	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927775	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1952362	1.00[ASN][1000 genomes]
rs2026670	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2395727	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28533484	0.86[ASN][1000 genomes]
rs35553201	0.86[ASN][1000 genomes]
rs4464790	0.86[ASN][1000 genomes]
rs4711598	0.86[ASN][1000 genomes]
rs4714253	0.87[ASN][1000 genomes]
rs4714254	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714255	0.88[ASN][1000 genomes]
rs9296299	0.84[ASN][1000 genomes]
rs9349120	0.88[ASN][1000 genomes]
rs9357305	0.85[ASN][1000 genomes]
rs9367009	0.81[ASN][1000 genomes]
rs9369117	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380861	0.91[ASN][1000 genomes]
rs9380863	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380864	0.91[ASN][1000 genomes]
rs9380865	0.89[ASN][1000 genomes]
rs9394592	0.91[ASN][1000 genomes]
rs9394595	0.89[ASN][1000 genomes]
rs9394600	0.81[ASN][1000 genomes]
rs9471103	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv428145	chr6:39404129-39460795	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39400400-39409200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:39401600-39404400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links